[{"dataset_id":"koutsogiannis-2023-017","title":"Toxoplasma gondii whole-cell dataset (Optical tomography (diffraction))","paper_title":"Assessment of Toxoplasma gondii lytic cycle and the impact of a gene deletion using 3D label-free optical diffraction holotomography.","year":2023,"source":"Frontiers in Cellular and Infection Microbiology","source_type":"paper","public_data_status":"none","species":"Toxoplasma gondii","cell_type":"Toxoplasma gondii","tissue_or_system":null,"comparator_class":"cell type","comparator_detail":"Cell Type/Species","modality":"Optical tomography (diffraction)","modality_family":"optical","lateral_resolution_nm":null,"axial_resolution_nm":null,"isotropic":null,"organelles":["nucleus"],"organelle_pairs":[],"metric_families":["volume","surface_area","other"],"sample_size":3,"sample_size_bucket":"2-10","metadata_completeness_score":0.85,"whole_cell_boundary_confirmed":"yes","notes":"1 WT, 2 cerS1 mutant","source_study_id":"Koutsogiannis 2023","publication_pmid":"37600951","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/37600951/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"paredes-santos-2012-018","title":"Toxoplasma gondii whole-cell dataset (FIB-SEM)","paper_title":"Dynamics and 3D organization of secretory organelles of Toxoplasma gondii.","year":2012,"source":"Journal of Structural Biology","source_type":"paper","public_data_status":"none","species":"Toxoplasma gondii","cell_type":"Toxoplasma gondii","tissue_or_system":null,"comparator_class":"cell cycle","comparator_detail":"Cell Cycle","modality":"FIB-SEM","modality_family":"EM","lateral_resolution_nm":25.0,"axial_resolution_nm":25.0,"isotropic":true,"organelles":["other: secretory organelles (microneme","rhoptry","dense granules)","conoid"],"organelle_pairs":["conoid:dense granules)","conoid:other: secretory organelles (microneme","conoid:rhoptry","dense granules):other: secretory organelles (microneme","dense granules):rhoptry","other: secretory organelles (microneme:rhoptry"],"metric_families":["other"],"sample_size":2,"sample_size_bucket":"2-10","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"2 reconstructions stated, 1 full 3D model visualized","source_study_id":"Paredes-Santos 2012","publication_pmid":"22155668","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/22155668/","public_locator_urls":[],"included_status":"included"}]