[{"dataset_id":"deshmukh-2024-092","title":"M. musculus, alpha cell whole-cell dataset (SXT)","paper_title":"Subcellular Feature-Based Classification of α and β Cells Using Soft X-ray Tomography.","year":2024,"source":"Cells","source_type":"paper","public_data_status":"none","species":"M. musculus","cell_type":"M. musculus, alpha cell","tissue_or_system":null,"comparator_class":"cell type","comparator_detail":"Cell Type/Species","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":38.25,"axial_resolution_nm":38.25,"isotropic":true,"organelles":["nucleus","mitochondria","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","surface_area","density"],"sample_size":8,"sample_size_bucket":"2-10","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"8 alpha, 7 beta","source_study_id":"Deshmukh 2024","publication_pmid":"38786091","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/38786091/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"deshmukh-2024-093","title":"M. musculus, beta cell whole-cell dataset (SXT)","paper_title":"Subcellular Feature-Based Classification of α and β Cells Using Soft X-ray Tomography.","year":2024,"source":"Cells","source_type":"paper","public_data_status":"none","species":"M. musculus","cell_type":"M. musculus, beta cell","tissue_or_system":null,"comparator_class":"cell type","comparator_detail":"Cell Type/Species","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":38.25,"axial_resolution_nm":38.25,"isotropic":true,"organelles":["nucleus","mitochondria","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","surface_area","density"],"sample_size":7,"sample_size_bucket":"2-10","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Deshmukh 2024","publication_pmid":"38786091","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/38786091/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"li-2022-087","title":"INS-1E (R. norvegicus) whole-cell dataset (SXT)","paper_title":"Auto-segmentation and time-dependent systematic analysis of mesoscale cellular structure in β-cells during insulin secretion.","year":2022,"source":"PLoS One.","source_type":"paper","public_data_status":"none","species":"Rodent","cell_type":"INS-1E (R. norvegicus)","tissue_or_system":null,"comparator_class":"metabolic condition","comparator_detail":"Metabolic State","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":60.0,"axial_resolution_nm":60.0,"isotropic":true,"organelles":["nucleus","mitochondria","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","count","distance","density"],"sample_size":132,"sample_size_bucket":"51+","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"40 tomograms from SXT extended to 132. unsure if those original 40 are included in the 132. 3 for analysis","source_study_id":"Li 2022","publication_pmid":"35324950","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/35324950/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"loconte-2022-088","title":"INS-1E (R. norvegicus) whole-cell dataset (SXT)","paper_title":"Soft X-ray tomography to map and quantify organelle interactions at the mesoscale.","year":2022,"source":"Structure","source_type":"paper","public_data_status":"none","species":"Rodent","cell_type":"INS-1E (R. norvegicus)","tissue_or_system":null,"comparator_class":"metabolic condition","comparator_detail":"Metabolic State","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":60.0,"axial_resolution_nm":60.0,"isotropic":true,"organelles":["nucleus","mitochondria","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","count","distance","contacts","density","other"],"sample_size":56,"sample_size_bucket":"51+","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Loconte 2022","publication_pmid":"35148829","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/35148829/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"loconte-2021-108","title":"GM12878 (B lymphocyte) whole-cell dataset (SXT)","paper_title":"Using soft X-ray tomography for rapid whole-cell quantitative imaging of SARS-CoV-2-infected cells.","year":2021,"source":"Cell Reports Methods","source_type":"paper","public_data_status":"none","species":"Human (differentiated)","cell_type":"GM12878 (B lymphocyte)","tissue_or_system":null,"comparator_class":"methodology","comparator_detail":"Stressors; Methodology; Other: stressors - viral infection","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":50.0,"axial_resolution_nm":50.0,"isotropic":true,"organelles":["er","mitochondria","lipid droplets","vesicles"],"organelle_pairs":["er:lipid droplets","er:mitochondria","er:vesicles","lipid droplets:mitochondria","lipid droplets:vesicles","mitochondria:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","other"],"sample_size":17,"sample_size_bucket":"11-50","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Loconte 2021","publication_pmid":"34729550","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/34729550/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"loconte-2021-117","title":"HEK293T whole-cell dataset (SXT)","paper_title":"Using soft X-ray tomography for rapid whole-cell quantitative imaging of SARS-CoV-2-infected cells.","year":2021,"source":"Cell Reports Methods","source_type":"paper","public_data_status":"none","species":"Human (cancerous)","cell_type":"HEK293T","tissue_or_system":null,"comparator_class":"methodology","comparator_detail":"Stressors; Methodology; Other: stressors - viral infection","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":50.0,"axial_resolution_nm":50.0,"isotropic":true,"organelles":["er","mitochondria","lipid droplets","vesicles"],"organelle_pairs":["er:lipid droplets","er:mitochondria","er:vesicles","lipid droplets:mitochondria","lipid droplets:vesicles","mitochondria:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","other"],"sample_size":3,"sample_size_bucket":"2-10","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Loconte 2021","publication_pmid":"34729550","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/34729550/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"white-2020-089","title":"INS-1E (R. norvegicus) whole-cell dataset (SXT)","paper_title":"Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography.","year":2020,"source":"Science Advances","source_type":"paper","public_data_status":"none","species":"Rodent","cell_type":"INS-1E (R. norvegicus)","tissue_or_system":null,"comparator_class":"metabolic condition","comparator_detail":"Metabolic State","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":60.0,"axial_resolution_nm":60.0,"isotropic":true,"organelles":["nucleus","mitochondria","lipid droplets","vesicles"],"organelle_pairs":["lipid droplets:mitochondria","lipid droplets:nucleus","lipid droplets:vesicles","mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","distance","density"],"sample_size":40,"sample_size_bucket":"11-50","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"8 x 5 conditions","source_study_id":"White 2020","publication_pmid":"33298443","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/33298443/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"fogelqvist-2017-116","title":"HEK293T whole-cell dataset (SXT)","paper_title":"Laboratory cryo x-ray microscopy for 3D cell imaging.","year":2017,"source":"Scientific Reports","source_type":"paper","public_data_status":"none","species":"Human (cancer)","cell_type":"HEK293T","tissue_or_system":null,"comparator_class":"other","comparator_detail":"Other: w/ and w/o interacting NK cells","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":100.0,"axial_resolution_nm":100.0,"isotropic":true,"organelles":["nucleus","vacuole/lysosome","vesicles"],"organelle_pairs":["nucleus:vacuole/lysosome","nucleus:vesicles","vacuole/lysosome:vesicles"],"metric_families":["dimensions"],"sample_size":2,"sample_size_bucket":"2-10","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Fogelqvist 2017","publication_pmid":"29044158","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/29044158/","public_locator_urls":[],"included_status":"included"}]