@article{egebjerg2024057,
  title = {Automated quantification of vacuole fusion and lipophagy in Saccharomyces cerevisiae from fluorescence and cryo-soft X-ray microscopy data using deep learning.},
  author = {Egebjerg 2024},
  journal = {Autophagy},
  year = {2024},
  pmid = {37908116},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (SXT)}
}

@article{hair2024013,
  title = {Whole cell reconstructions of Leishmania mexicana through the cell cycle.},
  author = {Hair 2024},
  journal = {PLOS Pathogens},
  year = {2024},
  pmid = {38416776},
  note = {Indexed in Scion: Leishmania mexicana whole-cell dataset (SBF-SEM)}
}

@article{xu2024043,
  title = {Near-Native Imaging of Label-Free Silver Nanoparticles-Triggered 3D Subcellular Ultrastructural Reorganization in Microalgae.},
  author = {Xu 2024},
  journal = {ACS Nano},
  year = {2024},
  pmid = {38198284},
  note = {Indexed in Scion: Chlamydomonas reinhartdii whole-cell dataset (SXT)}
}

@article{dang2023069,
  title = {Direct Visualization and Restoration of Metallic Ion-Induced Subcellular Ultrastructural Remodeling.},
  author = {Dang 2023},
  journal = {ACS Nano},
  year = {2023},
  pmid = {37156644},
  note = {Indexed in Scion: Candida utilis whole-cell dataset (SXT)}
}

@article{ezzedine2023035,
  title = {Adaptive traits of cysts of the snow alga Sanguina nivaloides unveiled by 3D subcellular imaging.},
  author = {Ezzedine 2023},
  journal = {Nature Communications},
  year = {2023},
  pmid = {37980360},
  note = {Indexed in Scion: Sanguina nivaloides whole-cell dataset (FIB-SEM)}
}

@article{feng2023038,
  title = {FIB-SEM analysis on three-dimensional structures of growing organelles in wild Chlorella pyrenoidosa cells.},
  author = {Feng 2023},
  journal = {Protoplasma},
  year = {2023},
  pmid = {36416933},
  note = {Indexed in Scion: Chlorella pyrenoidosa whole-cell dataset (FIB-SEM)}
}

@article{tashyreva2023001,
  title = {Ultrastructure and 3D reconstruction of a diplonemid protist (Diplonemea) and its novel membranous organelle.},
  author = {Tashyreva 2023},
  journal = {mBio},
  year = {2023},
  pmid = {37737610},
  note = {Indexed in Scion: Lacrimia vacuolata whole-cell dataset (SBF-SEM)}
}

@article{attias2022004,
  title = {Remarkable kinetoplast, cytostome-cytopharynx complex, and storage-related structures as dissected by three-dimensional reconstruction of Trypanosoma sp. 858 isolated from a toad (Amphibia: Anura)},
  author = {Attias 2022},
  journal = {Micron},
  year = {2022},
  pmid = {34798356},
  note = {Indexed in Scion: Trypanosoma sp. 858 whole-cell dataset (FIB-SEM)}
}

@article{chen2022107,
  title = {Soft X-ray Tomography Reveals HSV-1-Induced Remodeling of Human B Cells.},
  author = {Chen 2022},
  journal = {Viruses},
  year = {2022},
  pmid = {36560654},
  note = {Indexed in Scion: B lymphocyte whole-cell dataset (SXT)}
}

@article{loconte2021108,
  title = {Using soft X-ray tomography for rapid whole-cell quantitative imaging of SARS-CoV-2-infected cells.},
  author = {Loconte 2021},
  journal = {Cell Reports Methods},
  year = {2021},
  pmid = {34729550},
  note = {Indexed in Scion: GM12878 (B lymphocyte) whole-cell dataset (SXT)}
}

@article{loconte2021117,
  title = {Using soft X-ray tomography for rapid whole-cell quantitative imaging of SARS-CoV-2-infected cells.},
  author = {Loconte 2021},
  journal = {Cell Reports Methods},
  year = {2021},
  pmid = {34729550},
  note = {Indexed in Scion: HEK293T whole-cell dataset (SXT)}
}

@article{white2020089,
  title = {Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography.},
  author = {White 2020},
  journal = {Science Advances},
  year = {2020},
  pmid = {33298443},
  note = {Indexed in Scion: INS-1E (R. norvegicus) whole-cell dataset (SXT)}
}

@article{wu2020066,
  title = {Multi-scale 3D Cryo-Correlative Microscopy for Vitrified Cells.},
  author = {Wu 2020},
  journal = {Structure},
  year = {2020},
  pmid = {32814034},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)}
}

@article{liu2018070,
  title = {Quantitative imaging of Candida utilis and its organelles by soft X-ray Nano-CT.},
  author = {Liu 2018},
  journal = {Journal of Microscopy},
  year = {2018},
  pmid = {28960304},
  note = {Indexed in Scion: Candida utilis whole-cell dataset (SXT)}
}

@article{okumura2018097,
  title = {Electron tomography of whole cultured cells using novel transmission electron imaging technique.},
  author = {Okumura 2018},
  journal = {Micron},
  year = {2018},
  pmid = {29049927},
  note = {Indexed in Scion: Mm2T (Muntiacus muntjak) whole-cell dataset (ET)}
}

@article{valm2017100,
  title = {Applying systems-level spectral imaging and analysis to reveal the organelle interactome},
  author = {Valm 2017},
  journal = {Nature},
  year = {2017},
  pmid = {28538724},
  note = {Indexed in Scion: COS-7 (Cercopithecus aethiops) whole-cell dataset (Fluorescence (LLS))}
}

@article{ota2016036,
  title = {Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure.},
  author = {Ota 2016},
  journal = {Biotechnology for Biofuels},
  year = {2016},
  pmid = {26811738},
  note = {Indexed in Scion: Parachlorella kessleri whole-cell dataset (ssTEM)}
}

@article{diaz2015041,
  title = {Three-dimensional mass density mapping of cellular ultrastructure by ptychographic X-ray nanotomography.},
  author = {Diaz 2015},
  journal = {Journal of Structural Biology},
  year = {2015},
  pmid = {26470812},
  note = {Indexed in Scion: Chlamydomonas reinhartdii whole-cell dataset (HXT (ptychography))}
}

@article{hummel2012042,
  title = {3D Ultrastructural Organization of Whole Chlamydomonas reinhardtii Cells Studied by Nanoscale Soft X-Ray Tomography},
  author = {Hummel 2012},
  journal = {PLoS One},
  year = {2012},
  pmid = {23300909},
  note = {Indexed in Scion: Chlamydomonas reinhartdii whole-cell dataset (SXT)}
}

@article{wei2012063,
  title = {High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy.},
  author = {Wei 2012},
  journal = {Biotechniques},
  year = {2012},
  pmid = {22780318},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)}
}

@article{wei2012064,
  title = {High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy.},
  author = {Wei 2012},
  journal = {Biotechniques},
  year = {2012},
  pmid = {22780318},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)}
}

@article{wei2012065,
  title = {High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy.},
  author = {Wei 2012},
  journal = {Biotechniques},
  year = {2012},
  pmid = {22780318},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)}
}

@article{zheng2012054,
  title = {Quantitative 3D imaging of yeast by hard X-ray tomography.},
  author = {Zheng 2012},
  journal = {Microscopy research and technique},
  year = {2012},
  pmid = {22505187},
  note = {Indexed in Scion: Schizosaccharomyces pombe whole-cell dataset (HXT)}
}

@article{uchida2011062,
  title = {Quantitative analysis of yeast internal architecture using soft X-ray tomography.},
  author = {Uchida 2011},
  journal = {Yeast},
  year = {2011},
  pmid = {21360734},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (SXT)}
}

@article{hohmannmarriott2009022,
  title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography.},
  author = {Hohmann-Marriott 2009},
  journal = {Nature Methods},
  year = {2009},
  pmid = {19718033},
  note = {Indexed in Scion: Plasmodium falciparum whole-cell dataset (STEM)}
}

@article{uchida2009071,
  title = {Soft X-ray tomography of phenotypic switching and the cellular response to antifungal peptoids in Candida albicans.},
  author = {Uchida 2009},
  journal = {Proc Natl Acad Sci USA},
  year = {2009},
  pmid = {19880740},
  note = {Indexed in Scion: Candida albicans whole-cell dataset (SXT)}
}

@article{perktold2007061,
  title = {Organelle association visualized by three-dimensional ultrastructural imaging of the yeast cell},
  author = {Perktold 2007},
  journal = {FEMS Yeast Res},
  year = {2007},
  pmid = {17419771},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (ssTEM)}
}