@article{egebjerg2024057,
  title = {Automated quantification of vacuole fusion and lipophagy in Saccharomyces cerevisiae from fluorescence and cryo-soft X-ray microscopy data using deep learning.},
  author = {Egebjerg 2024},
  journal = {Autophagy},
  year = {2024},
  pmid = {37908116},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (SXT)}
}

@article{hair2024013,
  title = {Whole cell reconstructions of Leishmania mexicana through the cell cycle.},
  author = {Hair 2024},
  journal = {PLOS Pathogens},
  year = {2024},
  pmid = {38416776},
  note = {Indexed in Scion: Leishmania mexicana whole-cell dataset (SBF-SEM)}
}

@article{xu2024043,
  title = {Near-Native Imaging of Label-Free Silver Nanoparticles-Triggered 3D Subcellular Ultrastructural Reorganization in Microalgae.},
  author = {Xu 2024},
  journal = {ACS Nano},
  year = {2024},
  pmid = {38198284},
  note = {Indexed in Scion: Chlamydomonas reinhartdii whole-cell dataset (SXT)}
}

@article{antao2023068,
  title = {3D reconstructions of parasite development and the intracellular niche of the microsporidian pathogen Encephalitozoon intestinalis.},
  author = {Antao 2023},
  journal = {Nature Communications},
  year = {2023},
  pmid = {37996434},
  note = {Indexed in Scion: Encephalitozoon intestinalis whole-cell dataset (SBF-SEM)}
}

@article{bianco2023055,
  title = {Label-Free Intracellular Multi-Specificity in Yeast Cells by Phase-Contrast Tomographic Flow Cytometry.},
  author = {Bianco 2023},
  journal = {Small Methods},
  year = {2023},
  pmid = {37670547},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (Optical tomography (phase contrast))}
}

@article{dang2023069,
  title = {Direct Visualization and Restoration of Metallic Ion-Induced Subcellular Ultrastructural Remodeling.},
  author = {Dang 2023},
  journal = {ACS Nano},
  year = {2023},
  pmid = {37156644},
  note = {Indexed in Scion: Candida utilis whole-cell dataset (SXT)}
}

@article{feng2023038,
  title = {FIB-SEM analysis on three-dimensional structures of growing organelles in wild Chlorella pyrenoidosa cells.},
  author = {Feng 2023},
  journal = {Protoplasma},
  year = {2023},
  pmid = {36416933},
  note = {Indexed in Scion: Chlorella pyrenoidosa whole-cell dataset (FIB-SEM)}
}

@article{mirasole2023050,
  title = {Vacuolar control of stomatal opening revealed by 3D imaging of the guard cells.},
  author = {Mirasole 2023},
  journal = {Scientific Reports},
  year = {2023},
  pmid = {37169939},
  note = {Indexed in Scion: Arabidopsis thaliana, guard cell whole-cell dataset (Fluorescence)}
}

@article{midorikawa2022049,
  title = {Three-dimensional nanoscale analysis of light-dependent organelle changes in Arabidopsis mesophyll cells},
  author = {Midorikawa 2022},
  journal = {PNAS Nexus},
  year = {2022},
  pmid = {36712360},
  note = {Indexed in Scion: Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM)}
}

@article{zechmann2022045,
  title = {Volumetric 3D reconstruction of plant leaf cells using SEM, ion milling, TEM, and serial sectioning.},
  author = {Zechmann 2022},
  journal = {Planta},
  year = {2022},
  pmid = {35522384},
  note = {Indexed in Scion: Nicotiana tabacum whole-cell dataset (FIB-SEM)}
}

@article{zechmann2022046,
  title = {Volumetric 3D reconstruction of plant leaf cells using SEM, ion milling, TEM, and serial sectioning.},
  author = {Zechmann 2022},
  journal = {Planta},
  year = {2022},
  pmid = {35522384},
  note = {Indexed in Scion: Nicotiana tabacum whole-cell dataset (ssTEM)}
}

@article{zechmann2022047,
  title = {Volumetric 3D reconstruction of plant leaf cells using SEM, ion milling, TEM, and serial sectioning.},
  author = {Zechmann 2022},
  journal = {Planta},
  year = {2022},
  pmid = {35522384},
  note = {Indexed in Scion: Cucurbita pepo whole-cell dataset (FIB-SEM)}
}

@article{zechmann2022048,
  title = {Volumetric 3D reconstruction of plant leaf cells using SEM, ion milling, TEM, and serial sectioning.},
  author = {Zechmann 2022},
  journal = {Planta},
  year = {2022},
  pmid = {35522384},
  note = {Indexed in Scion: Cucurbita pepo whole-cell dataset (ssTEM)}
}

@article{decelle2021003,
  title = {Subcellular architecture and metabolic connection in the planktonic photosymbiosis between Collodaria (radiolarians) and their microalgae.},
  author = {Decelle 2021},
  journal = {Environmental Microbiology},
  year = {2021},
  pmid = {34499794},
  note = {Indexed in Scion: Brandtodinium nutricula whole-cell dataset (FIB-SEM)}
}

@article{uwizeye2021b029,
  title = {Cytoklepty in the plankton: A host strategy to optimize the bioenergetic machinery of endosymbiotic algae.},
  author = {Uwizeye 2021b},
  journal = {PNAS},
  year = {2021},
  pmid = {34215695},
  note = {Indexed in Scion: Phaeocystis cordata whole-cell dataset (FIB-SEM)}
}

@article{rudlaff2020023,
  title = {Three-dimensional ultrastructure of Plasmodium falciparum throughout cytokinesis.},
  author = {Rudlaff 2020},
  journal = {PLOS Pathogens},
  year = {2020},
  pmid = {32511279},
  note = {Indexed in Scion: Plasmodium falciparum whole-cell dataset (FIB-SEM)}
}

@article{umemura2020034,
  title = {Label-free imaging and analysis of subcellular parts of a living diatom cylindrotheca sp. using optical diffraction tomography.},
  author = {Umemura 2020},
  journal = {MethodsX},
  year = {2020},
  pmid = {32382522},
  note = {Indexed in Scion: Cylindrotheca sp. whole-cell dataset (Optical tomography (diffraction))}
}

@article{wu2020066,
  title = {Multi-scale 3D Cryo-Correlative Microscopy for Vitrified Cells.},
  author = {Wu 2020},
  journal = {Structure},
  year = {2020},
  pmid = {32814034},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)}
}

@article{cui2019051,
  title = {A whole-cell electron tomography model of vacuole biogenesis in Arabidopsis root cells.},
  author = {Cui 2019},
  journal = {Nature Plants},
  year = {2019},
  pmid = {30559414},
  note = {Indexed in Scion: Arabidopsis thaliana, cortical root whole-cell dataset (ET (cryo))}
}

@article{laundon2019072,
  title = {The architecture of cell differentiation in choanoflagellates and sponge choanocytes.},
  author = {Laundon 2019},
  journal = {PLOS Biology},
  year = {2019},
  pmid = {30978201},
  note = {Indexed in Scion: Salpingoeca rosetta whole-cell dataset (ssTEM)}
}

@article{laundon2019073,
  title = {The architecture of cell differentiation in choanoflagellates and sponge choanocytes.},
  author = {Laundon 2019},
  journal = {PLOS Biology},
  year = {2019},
  pmid = {30978201},
  note = {Indexed in Scion: Oscarella carmela, choanocytes whole-cell dataset (ssTEM)}
}

@article{liu2018070,
  title = {Quantitative imaging of Candida utilis and its organelles by soft X-ray Nano-CT.},
  author = {Liu 2018},
  journal = {Journal of Microscopy},
  year = {2018},
  pmid = {28960304},
  note = {Indexed in Scion: Candida utilis whole-cell dataset (SXT)}
}

@article{yao2018091,
  title = {Three-dimensional ultrastructural imaging reveals the nanoscale architecture of mammalian cells.},
  author = {Yao 2018},
  journal = {IUCrJ},
  year = {2018},
  pmid = {29765603},
  note = {Indexed in Scion: M. musculus, macrophage whole-cell dataset (STXM)}
}

@article{fogelqvist2017116,
  title = {Laboratory cryo x-ray microscopy for 3D cell imaging.},
  author = {Fogelqvist 2017},
  journal = {Scientific Reports},
  year = {2017},
  pmid = {29044158},
  note = {Indexed in Scion: HEK293T whole-cell dataset (SXT)}
}

@article{valm2017100,
  title = {Applying systems-level spectral imaging and analysis to reveal the organelle interactome},
  author = {Valm 2017},
  journal = {Nature},
  year = {2017},
  pmid = {28538724},
  note = {Indexed in Scion: COS-7 (Cercopithecus aethiops) whole-cell dataset (Fluorescence (LLS))}
}

@article{ota2016036,
  title = {Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure.},
  author = {Ota 2016},
  journal = {Biotechnology for Biofuels},
  year = {2016},
  pmid = {26811738},
  note = {Indexed in Scion: Parachlorella kessleri whole-cell dataset (ssTEM)}
}

@article{sakaguchi2016024,
  title = {Three-dimensional analysis of morphological changes in the malaria parasite infected red blood cell by serial block-face scanning electron microscopy.},
  author = {Sakaguchi 2016},
  journal = {Journal of Structural Biology},
  year = {2016},
  pmid = {26772147},
  note = {Indexed in Scion: Plasmodium falciparum whole-cell dataset (SBF-SEM)}
}

@article{diaz2015041,
  title = {Three-dimensional mass density mapping of cellular ultrastructure by ptychographic X-ray nanotomography.},
  author = {Diaz 2015},
  journal = {Journal of Structural Biology},
  year = {2015},
  pmid = {26470812},
  note = {Indexed in Scion: Chlamydomonas reinhartdii whole-cell dataset (HXT (ptychography))}
}

@article{niclis2015101,
  title = {Three-dimensional imaging of human stem cells using soft X-ray tomography.},
  author = {Niclis 2015},
  journal = {J Royal Society Interface},
  year = {2015},
  pmid = {26063819},
  note = {Indexed in Scion: hESC (embryonic) whole-cell dataset (SXT)}
}

@article{niclis2015102,
  title = {Three-dimensional imaging of human stem cells using soft X-ray tomography.},
  author = {Niclis 2015},
  journal = {J Royal Society Interface},
  year = {2015},
  pmid = {26063819},
  note = {Indexed in Scion: hASC (adipose-derived) whole-cell dataset (SXT)}
}

@article{wacker2015075,
  title = {Array tomography: characterizing FAC-sorted populations of zebrafish immune cells by their 3D ultrastructure.},
  author = {Wacker 2015},
  journal = {Journal of Microscopy},
  year = {2015},
  pmid = {25611576},
  note = {Indexed in Scion: Danio rerio, "long process" cell whole-cell dataset (SEM-AT)}
}

@article{wacker2015076,
  title = {Array tomography: characterizing FAC-sorted populations of zebrafish immune cells by their 3D ultrastructure.},
  author = {Wacker 2015},
  journal = {Journal of Microscopy},
  year = {2015},
  pmid = {25611576},
  note = {Indexed in Scion: Danio rerio, "cogwheel" cell whole-cell dataset (SEM-AT)}
}

@article{wacker2015077,
  title = {Array tomography: characterizing FAC-sorted populations of zebrafish immune cells by their 3D ultrastructure.},
  author = {Wacker 2015},
  journal = {Journal of Microscopy},
  year = {2015},
  pmid = {25611576},
  note = {Indexed in Scion: Danio rerio, thymus whole-cell dataset (SEM-AT)}
}

@article{wacker2015084,
  title = {Array tomography: characterizing FAC-sorted populations of zebrafish immune cells by their 3D ultrastructure.},
  author = {Wacker 2015},
  journal = {Journal of Microscopy},
  year = {2015},
  pmid = {25611576},
  note = {Indexed in Scion: Danio rerio, cytotoxic T cell whole-cell dataset (SEM-AT)}
}

@article{wacker2015085,
  title = {Array tomography: characterizing FAC-sorted populations of zebrafish immune cells by their 3D ultrastructure.},
  author = {Wacker 2015},
  journal = {Journal of Microscopy},
  year = {2015},
  pmid = {25611576},
  note = {Indexed in Scion: Danio rerio, adrenal medulla neutrophil whole-cell dataset (SEM-AT)}
}

@article{murata2014060,
  title = {Whole-cell imaging of the budding yeast Saccharomyces cerevisiae by high-voltage scanning transmission electron tomography},
  author = {Murata 2014},
  journal = {Ultramicroscopy},
  year = {2014},
  pmid = {24935612},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (STEM)}
}

@article{carlson2013056,
  title = {Laboratory-based cryogenic soft x-ray tomography with correlative cryo-light and electron microscopy.},
  author = {Carlson 2013},
  journal = {Microscopy and Microanalysis},
  year = {2013},
  pmid = {23332214},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (SXT)}
}

@article{girarddias2012006,
  title = {On the ultrastructural organization of Trypanosoma cruzi using cryopreparation methods and electron tomography.},
  author = {Girard-Dias 2012},
  journal = {Histochemistry and Cell Biology},
  year = {2012},
  pmid = {22872316},
  note = {Indexed in Scion: Trypanosoma cruzi whole-cell dataset (ET (cryo))}
}

@article{hummel2012042,
  title = {3D Ultrastructural Organization of Whole Chlamydomonas reinhardtii Cells Studied by Nanoscale Soft X-Ray Tomography},
  author = {Hummel 2012},
  journal = {PLoS One},
  year = {2012},
  pmid = {23300909},
  note = {Indexed in Scion: Chlamydomonas reinhartdii whole-cell dataset (SXT)}
}

@article{medeiros2012011,
  title = {Visualizing the 3D architecture of multiple erythrocytes infected with Plasmodium at nanoscale by focused ion beam-scanning electron microscopy.},
  author = {Medeiros 2012},
  journal = {PLoS One},
  year = {2012},
  pmid = {22432024},
  note = {Indexed in Scion: Plasmodium chaubadi whole-cell dataset (FIB-SEM)}
}

@article{wei2012063,
  title = {High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy.},
  author = {Wei 2012},
  journal = {Biotechniques},
  year = {2012},
  pmid = {22780318},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)}
}

@article{wei2012064,
  title = {High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy.},
  author = {Wei 2012},
  journal = {Biotechniques},
  year = {2012},
  pmid = {22780318},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)}
}

@article{wei2012065,
  title = {High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy.},
  author = {Wei 2012},
  journal = {Biotechniques},
  year = {2012},
  pmid = {22780318},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)}
}

@article{zheng2012054,
  title = {Quantitative 3D imaging of yeast by hard X-ray tomography.},
  author = {Zheng 2012},
  journal = {Microscopy research and technique},
  year = {2012},
  pmid = {22505187},
  note = {Indexed in Scion: Schizosaccharomyces pombe whole-cell dataset (HXT)}
}

@article{uchida2011062,
  title = {Quantitative analysis of yeast internal architecture using soft X-ray tomography.},
  author = {Uchida 2011},
  journal = {Yeast},
  year = {2011},
  pmid = {21360734},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (SXT)}
}

@article{yamaguchi2011067,
  title = {Structome of Saccharomyces cerevisiae determined by freeze-substitution and serial ultrathin-sectioning electron microscopy.},
  author = {Yamaguchi 2011},
  journal = {J Electron Microsc (Tokyo)},
  year = {2011},
  pmid = {21908548},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (ssTEM)}
}

@article{hanssen2010019,
  title = {Ultrastructure of the asexual blood stages of Plasmodium falciparum.},
  author = {Hanssen 2010},
  journal = {Methods in Cell Biology},
  year = {2010},
  pmid = {20869520},
  note = {Indexed in Scion: Plasmodium falciparum whole-cell dataset (ET (cryo))}
}

@article{jiang2010052,
  title = {Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy.},
  author = {Jiang 2010},
  journal = {PNAS},
  year = {2010},
  pmid = {20534442},
  note = {Indexed in Scion: Schizosaccharomyces pombe whole-cell dataset (X-ray diffraction)}
}

@article{hohmannmarriott2009022,
  title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography.},
  author = {Hohmann-Marriott 2009},
  journal = {Nature Methods},
  year = {2009},
  pmid = {19718033},
  note = {Indexed in Scion: Plasmodium falciparum whole-cell dataset (STEM)}
}

@article{uchida2009071,
  title = {Soft X-ray tomography of phenotypic switching and the cellular response to antifungal peptoids in Candida albicans.},
  author = {Uchida 2009},
  journal = {Proc Natl Acad Sci USA},
  year = {2009},
  pmid = {19880740},
  note = {Indexed in Scion: Candida albicans whole-cell dataset (SXT)}
}

@article{parkinson2008053,
  title = {Quantitative 3-D imaging of eukaryotic cells using soft X-ray tomography.},
  author = {Parkinson 2008},
  journal = {Journal of Structural Biology},
  year = {2008},
  pmid = {18387313},
  note = {Indexed in Scion: Schizosaccharomyces pombe whole-cell dataset (SXT)}
}

@article{perktold2007061,
  title = {Organelle association visualized by three-dimensional ultrastructural imaging of the yeast cell},
  author = {Perktold 2007},
  journal = {FEMS Yeast Res},
  year = {2007},
  pmid = {17419771},
  note = {Indexed in Scion: Saccharomyces cerevisiae whole-cell dataset (ssTEM)}
}