[{"dataset_id":"uwizeye-2021a-039","title":"Pelagomonas whole-cell dataset (FIB-SEM)","paper_title":"Morphological bases of phytoplankton energy management and physiological responses unveiled by 3D subcellular imaging.","year":2021,"source":"Nature Communications","source_type":"paper","public_data_status":"partial","species":"Protist (plankton)","cell_type":"Pelagomonas","tissue_or_system":null,"comparator_class":"cell type","comparator_detail":"Light/Dark; Cell Type/Species; Other: Trophic conditions","modality":"FIB-SEM","modality_family":"EM","lateral_resolution_nm":6.0,"axial_resolution_nm":6.0,"isotropic":true,"organelles":["nucleus","mitochondria","chloroplast/plastid","vesicles"],"organelle_pairs":["chloroplast/plastid:mitochondria","chloroplast/plastid:nucleus","chloroplast/plastid:vesicles","mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","surface_area","contacts"],"sample_size":3,"sample_size_bucket":"2-10","metadata_completeness_score":1.0,"whole_cell_boundary_confirmed":"yes","notes":"Some public data available.","source_study_id":"Uwizeye 2021a","publication_pmid":"33594064","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/33594064/","public_locator_urls":["https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BSST575","https://www.ebi.ac.uk/biostudies/studies/S-BSST575"],"included_status":"included"},{"dataset_id":"laundon-2019-072","title":"Salpingoeca rosetta whole-cell dataset (ssTEM)","paper_title":"The architecture of cell differentiation in choanoflagellates and sponge choanocytes.","year":2019,"source":"PLOS Biology","source_type":"paper","public_data_status":"partial","species":"Salpingoeca rosetta","cell_type":"Salpingoeca rosetta","tissue_or_system":null,"comparator_class":"developmental stage","comparator_detail":"Cell Type/Species; Other: Differentiation","modality":"ssTEM","modality_family":"EM","lateral_resolution_nm":null,"axial_resolution_nm":110.0,"isotropic":null,"organelles":["nucleus","er","mitochondria","vacuole/lysosome","golgi","flagella/cilia","centrosome/basal body","vesicles"],"organelle_pairs":["centrosome/basal body:er","centrosome/basal body:flagella/cilia","centrosome/basal body:golgi","centrosome/basal body:mitochondria","centrosome/basal body:nucleus","centrosome/basal body:vacuole/lysosome","centrosome/basal body:vesicles","er:flagella/cilia","er:golgi","er:mitochondria","er:nucleus","er:vacuole/lysosome","er:vesicles","flagella/cilia:golgi","flagella/cilia:mitochondria","flagella/cilia:nucleus","flagella/cilia:vacuole/lysosome","flagella/cilia:vesicles","golgi:mitochondria","golgi:nucleus","golgi:vacuole/lysosome","golgi:vesicles","mitochondria:nucleus","mitochondria:vacuole/lysosome","mitochondria:vesicles","nucleus:vacuole/lysosome","nucleus:vesicles","vacuole/lysosome:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","distance","contacts","shape"],"sample_size":6,"sample_size_bucket":"2-10","metadata_completeness_score":1.0,"whole_cell_boundary_confirmed":"yes","notes":"Some public data available. 3 colonial, 3 single","source_study_id":"Laundon 2019","publication_pmid":"30978201","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/30978201/","public_locator_urls":["https://doi.org/10.6084/m9.figshare.7346750.v2"],"included_status":"included"},{"dataset_id":"sakaguchi-2016-024","title":"Plasmodium falciparum whole-cell dataset (SBF-SEM)","paper_title":"Three-dimensional analysis of morphological changes in the malaria parasite infected red blood cell by serial block-face scanning electron microscopy.","year":2016,"source":"Journal of Structural Biology","source_type":"paper","public_data_status":"partial","species":"Plasmodium falciparum","cell_type":"Plasmodium falciparum","tissue_or_system":null,"comparator_class":"developmental stage","comparator_detail":"Other: developmental/life cycle stages","modality":"SBF-SEM","modality_family":"EM","lateral_resolution_nm":8.22,"axial_resolution_nm":70.0,"isotropic":false,"organelles":["nucleus","mitochondria","vacuole/lysosome","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vacuole/lysosome","mitochondria:vesicles","nucleus:vacuole/lysosome","nucleus:vesicles","vacuole/lysosome:vesicles"],"metric_families":["volume","volume_fraction","surface_area"],"sample_size":22,"sample_size_bucket":"11-50","metadata_completeness_score":1.0,"whole_cell_boundary_confirmed":"yes","notes":"Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles","source_study_id":"Sakaguchi 2016","publication_pmid":"26772147","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/26772147/","public_locator_urls":["https://www.ebi.ac.uk/empiar/EMPIAR-10052/","https://www.ebi.ac.uk/empiar/EMPIAR-10053/","https://www.ebi.ac.uk/empiar/EMPIAR-10054/","https://www.ebi.ac.uk/empiar/EMPIAR-10055/"],"included_status":"included"}]