[{"dataset_id":"deshmukh-2024-092","title":"M. musculus, alpha cell whole-cell dataset (SXT)","paper_title":"Subcellular Feature-Based Classification of α and β Cells Using Soft X-ray Tomography.","year":2024,"source":"Cells","source_type":"paper","public_data_status":"none","species":"M. musculus","cell_type":"M. musculus, alpha cell","tissue_or_system":null,"comparator_class":"cell type","comparator_detail":"Cell Type/Species","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":38.25,"axial_resolution_nm":38.25,"isotropic":true,"organelles":["nucleus","mitochondria","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","surface_area","density"],"sample_size":8,"sample_size_bucket":"2-10","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"8 alpha, 7 beta","source_study_id":"Deshmukh 2024","publication_pmid":"38786091","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/38786091/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"deshmukh-2024-093","title":"M. musculus, beta cell whole-cell dataset (SXT)","paper_title":"Subcellular Feature-Based Classification of α and β Cells Using Soft X-ray Tomography.","year":2024,"source":"Cells","source_type":"paper","public_data_status":"none","species":"M. musculus","cell_type":"M. musculus, beta cell","tissue_or_system":null,"comparator_class":"cell type","comparator_detail":"Cell Type/Species","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":38.25,"axial_resolution_nm":38.25,"isotropic":true,"organelles":["nucleus","mitochondria","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","surface_area","density"],"sample_size":7,"sample_size_bucket":"2-10","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Deshmukh 2024","publication_pmid":"38786091","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/38786091/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"jadav-2023-111","title":"H446 (lung cancer) whole-cell dataset (SBF-SEM)","paper_title":"Beyond the surface: Investigation of tumorsphere morphology using volume electron microscopy.","year":2023,"source":"Journal of Structural Biology","source_type":"paper","public_data_status":"none","species":"Human (cancer)","cell_type":"H446 (lung cancer)","tissue_or_system":null,"comparator_class":"cell cycle","comparator_detail":"Cell Cycle; Methodology","modality":"SBF-SEM","modality_family":"EM","lateral_resolution_nm":9.0,"axial_resolution_nm":27.0,"isotropic":false,"organelles":["nucleus","mitochondria","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","count","surface_area","shape"],"sample_size":6,"sample_size_bucket":"2-10","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Jadav 2023","publication_pmid":"37805154","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/37805154/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"li-2022-087","title":"INS-1E (R. norvegicus) whole-cell dataset (SXT)","paper_title":"Auto-segmentation and time-dependent systematic analysis of mesoscale cellular structure in β-cells during insulin secretion.","year":2022,"source":"PLoS One.","source_type":"paper","public_data_status":"none","species":"Rodent","cell_type":"INS-1E (R. norvegicus)","tissue_or_system":null,"comparator_class":"metabolic condition","comparator_detail":"Metabolic State","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":60.0,"axial_resolution_nm":60.0,"isotropic":true,"organelles":["nucleus","mitochondria","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","count","distance","density"],"sample_size":132,"sample_size_bucket":"51+","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"40 tomograms from SXT extended to 132. unsure if those original 40 are included in the 132. 3 for analysis","source_study_id":"Li 2022","publication_pmid":"35324950","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/35324950/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"loconte-2022-088","title":"INS-1E (R. norvegicus) whole-cell dataset (SXT)","paper_title":"Soft X-ray tomography to map and quantify organelle interactions at the mesoscale.","year":2022,"source":"Structure","source_type":"paper","public_data_status":"none","species":"Rodent","cell_type":"INS-1E (R. norvegicus)","tissue_or_system":null,"comparator_class":"metabolic condition","comparator_detail":"Metabolic State","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":60.0,"axial_resolution_nm":60.0,"isotropic":true,"organelles":["nucleus","mitochondria","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","count","distance","contacts","density","other"],"sample_size":56,"sample_size_bucket":"51+","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Loconte 2022","publication_pmid":"35148829","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/35148829/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"loconte-2021-108","title":"GM12878 (B lymphocyte) whole-cell dataset (SXT)","paper_title":"Using soft X-ray tomography for rapid whole-cell quantitative imaging of SARS-CoV-2-infected cells.","year":2021,"source":"Cell Reports Methods","source_type":"paper","public_data_status":"none","species":"Human (differentiated)","cell_type":"GM12878 (B lymphocyte)","tissue_or_system":null,"comparator_class":"methodology","comparator_detail":"Stressors; Methodology; Other: stressors - viral infection","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":50.0,"axial_resolution_nm":50.0,"isotropic":true,"organelles":["er","mitochondria","lipid droplets","vesicles"],"organelle_pairs":["er:lipid droplets","er:mitochondria","er:vesicles","lipid droplets:mitochondria","lipid droplets:vesicles","mitochondria:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","other"],"sample_size":17,"sample_size_bucket":"11-50","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Loconte 2021","publication_pmid":"34729550","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/34729550/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"loconte-2021-117","title":"HEK293T whole-cell dataset (SXT)","paper_title":"Using soft X-ray tomography for rapid whole-cell quantitative imaging of SARS-CoV-2-infected cells.","year":2021,"source":"Cell Reports Methods","source_type":"paper","public_data_status":"none","species":"Human (cancerous)","cell_type":"HEK293T","tissue_or_system":null,"comparator_class":"methodology","comparator_detail":"Stressors; Methodology; Other: stressors - viral infection","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":50.0,"axial_resolution_nm":50.0,"isotropic":true,"organelles":["er","mitochondria","lipid droplets","vesicles"],"organelle_pairs":["er:lipid droplets","er:mitochondria","er:vesicles","lipid droplets:mitochondria","lipid droplets:vesicles","mitochondria:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","other"],"sample_size":3,"sample_size_bucket":"2-10","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Loconte 2021","publication_pmid":"34729550","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/34729550/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"uwizeye-2021a-039","title":"Pelagomonas whole-cell dataset (FIB-SEM)","paper_title":"Morphological bases of phytoplankton energy management and physiological responses unveiled by 3D subcellular imaging.","year":2021,"source":"Nature Communications","source_type":"paper","public_data_status":"partial","species":"Protist (plankton)","cell_type":"Pelagomonas","tissue_or_system":null,"comparator_class":"cell type","comparator_detail":"Light/Dark; Cell Type/Species; Other: Trophic conditions","modality":"FIB-SEM","modality_family":"EM","lateral_resolution_nm":6.0,"axial_resolution_nm":6.0,"isotropic":true,"organelles":["nucleus","mitochondria","chloroplast/plastid","vesicles"],"organelle_pairs":["chloroplast/plastid:mitochondria","chloroplast/plastid:nucleus","chloroplast/plastid:vesicles","mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","surface_area","contacts"],"sample_size":3,"sample_size_bucket":"2-10","metadata_completeness_score":1.0,"whole_cell_boundary_confirmed":"yes","notes":"Some public data available.","source_study_id":"Uwizeye 2021a","publication_pmid":"33594064","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/33594064/","public_locator_urls":["https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BSST575","https://www.ebi.ac.uk/biostudies/studies/S-BSST575"],"included_status":"included"},{"dataset_id":"white-2020-089","title":"INS-1E (R. norvegicus) whole-cell dataset (SXT)","paper_title":"Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography.","year":2020,"source":"Science Advances","source_type":"paper","public_data_status":"none","species":"Rodent","cell_type":"INS-1E (R. norvegicus)","tissue_or_system":null,"comparator_class":"metabolic condition","comparator_detail":"Metabolic State","modality":"SXT","modality_family":"X-ray","lateral_resolution_nm":60.0,"axial_resolution_nm":60.0,"isotropic":true,"organelles":["nucleus","mitochondria","lipid droplets","vesicles"],"organelle_pairs":["lipid droplets:mitochondria","lipid droplets:nucleus","lipid droplets:vesicles","mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","distance","density"],"sample_size":40,"sample_size_bucket":"11-50","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"8 x 5 conditions","source_study_id":"White 2020","publication_pmid":"33298443","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/33298443/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"wu-2020-066","title":"Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)","paper_title":"Multi-scale 3D Cryo-Correlative Microscopy for Vitrified Cells.","year":2020,"source":"Structure","source_type":"paper","public_data_status":"none","species":"Saccharomyces cerevisiae","cell_type":"Saccharomyces cerevisiae","tissue_or_system":null,"comparator_class":"methodology","comparator_detail":"Stressors; Methodology","modality":"FIB-SEM","modality_family":"EM","lateral_resolution_nm":17.39,"axial_resolution_nm":17.39,"isotropic":true,"organelles":["nucleus","mitochondria","vacuole/lysosome","lipid droplets","vesicles"],"organelle_pairs":["lipid droplets:mitochondria","lipid droplets:nucleus","lipid droplets:vacuole/lysosome","lipid droplets:vesicles","mitochondria:nucleus","mitochondria:vacuole/lysosome","mitochondria:vesicles","nucleus:vacuole/lysosome","nucleus:vesicles","vacuole/lysosome:vesicles"],"metric_families":["other"],"sample_size":1,"sample_size_bucket":"1","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"comparing 3 modalities on 1 cell, FIB-SEM produces the only \"whole cell\"","source_study_id":"Wu 2020","publication_pmid":"32814034","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/32814034/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"laundon-2019-072","title":"Salpingoeca rosetta whole-cell dataset (ssTEM)","paper_title":"The architecture of cell differentiation in choanoflagellates and sponge choanocytes.","year":2019,"source":"PLOS Biology","source_type":"paper","public_data_status":"partial","species":"Salpingoeca rosetta","cell_type":"Salpingoeca rosetta","tissue_or_system":null,"comparator_class":"developmental stage","comparator_detail":"Cell Type/Species; Other: Differentiation","modality":"ssTEM","modality_family":"EM","lateral_resolution_nm":null,"axial_resolution_nm":110.0,"isotropic":null,"organelles":["nucleus","er","mitochondria","vacuole/lysosome","golgi","flagella/cilia","centrosome/basal body","vesicles"],"organelle_pairs":["centrosome/basal body:er","centrosome/basal body:flagella/cilia","centrosome/basal body:golgi","centrosome/basal body:mitochondria","centrosome/basal body:nucleus","centrosome/basal body:vacuole/lysosome","centrosome/basal body:vesicles","er:flagella/cilia","er:golgi","er:mitochondria","er:nucleus","er:vacuole/lysosome","er:vesicles","flagella/cilia:golgi","flagella/cilia:mitochondria","flagella/cilia:nucleus","flagella/cilia:vacuole/lysosome","flagella/cilia:vesicles","golgi:mitochondria","golgi:nucleus","golgi:vacuole/lysosome","golgi:vesicles","mitochondria:nucleus","mitochondria:vacuole/lysosome","mitochondria:vesicles","nucleus:vacuole/lysosome","nucleus:vesicles","vacuole/lysosome:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","distance","contacts","shape"],"sample_size":6,"sample_size_bucket":"2-10","metadata_completeness_score":1.0,"whole_cell_boundary_confirmed":"yes","notes":"Some public data available. 3 colonial, 3 single","source_study_id":"Laundon 2019","publication_pmid":"30978201","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/30978201/","public_locator_urls":["https://doi.org/10.6084/m9.figshare.7346750.v2"],"included_status":"included"},{"dataset_id":"sakaguchi-2016-024","title":"Plasmodium falciparum whole-cell dataset (SBF-SEM)","paper_title":"Three-dimensional analysis of morphological changes in the malaria parasite infected red blood cell by serial block-face scanning electron microscopy.","year":2016,"source":"Journal of Structural Biology","source_type":"paper","public_data_status":"partial","species":"Plasmodium falciparum","cell_type":"Plasmodium falciparum","tissue_or_system":null,"comparator_class":"developmental stage","comparator_detail":"Other: developmental/life cycle stages","modality":"SBF-SEM","modality_family":"EM","lateral_resolution_nm":8.22,"axial_resolution_nm":70.0,"isotropic":false,"organelles":["nucleus","mitochondria","vacuole/lysosome","vesicles"],"organelle_pairs":["mitochondria:nucleus","mitochondria:vacuole/lysosome","mitochondria:vesicles","nucleus:vacuole/lysosome","nucleus:vesicles","vacuole/lysosome:vesicles"],"metric_families":["volume","volume_fraction","surface_area"],"sample_size":22,"sample_size_bucket":"11-50","metadata_completeness_score":1.0,"whole_cell_boundary_confirmed":"yes","notes":"Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles","source_study_id":"Sakaguchi 2016","publication_pmid":"26772147","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/26772147/","public_locator_urls":["https://www.ebi.ac.uk/empiar/EMPIAR-10052/","https://www.ebi.ac.uk/empiar/EMPIAR-10053/","https://www.ebi.ac.uk/empiar/EMPIAR-10054/","https://www.ebi.ac.uk/empiar/EMPIAR-10055/"],"included_status":"included"},{"dataset_id":"gluenz-2015-008","title":"Trypanosoma brucei whole-cell dataset (SBF-SEM)","paper_title":"Scanning and three-dimensional electron microscopy methods for the study of Trypanosoma brucei and Leishmania mexicana flagella.","year":2015,"source":"Methods in Cell Biology","source_type":"paper","public_data_status":"none","species":"Trypanosoma brucei","cell_type":"Trypanosoma brucei","tissue_or_system":null,"comparator_class":null,"comparator_detail":null,"modality":"SBF-SEM","modality_family":"EM","lateral_resolution_nm":6.1,"axial_resolution_nm":100.0,"isotropic":false,"organelles":["nucleus","mitochondria","vesicles","flagella/cilia"],"organelle_pairs":["flagella/cilia:mitochondria","flagella/cilia:nucleus","flagella/cilia:vesicles","mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["other"],"sample_size":1,"sample_size_bucket":"1","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"Fig 9. original data","source_study_id":"Gluenz 2015","publication_pmid":"25837406","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/25837406/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"wei-2012-063","title":"Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)","paper_title":"High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy.","year":2012,"source":"Biotechniques","source_type":"paper","public_data_status":"none","species":"Saccharomyces cerevisiae","cell_type":"Saccharomyces cerevisiae","tissue_or_system":null,"comparator_class":null,"comparator_detail":null,"modality":"FIB-SEM","modality_family":"EM","lateral_resolution_nm":3.0,"axial_resolution_nm":3.0,"isotropic":true,"organelles":["nucleus","er","mitochondria","vacuole/lysosome","lipid droplets","golgi","vesicles"],"organelle_pairs":["er:golgi","er:lipid droplets","er:mitochondria","er:nucleus","er:vacuole/lysosome","er:vesicles","golgi:lipid droplets","golgi:mitochondria","golgi:nucleus","golgi:vacuole/lysosome","golgi:vesicles","lipid droplets:mitochondria","lipid droplets:nucleus","lipid droplets:vacuole/lysosome","lipid droplets:vesicles","mitochondria:nucleus","mitochondria:vacuole/lysosome","mitochondria:vesicles","nucleus:vacuole/lysosome","nucleus:vesicles","vacuole/lysosome:vesicles"],"metric_families":["volume","volume_fraction","dimensions"],"sample_size":1,"sample_size_bucket":"1","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"1 cell per resolution","source_study_id":"Wei 2012","publication_pmid":"22780318","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/22780318/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"wei-2012-064","title":"Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)","paper_title":"High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy.","year":2012,"source":"Biotechniques","source_type":"paper","public_data_status":"none","species":"Saccharomyces cerevisiae","cell_type":"Saccharomyces cerevisiae","tissue_or_system":null,"comparator_class":null,"comparator_detail":null,"modality":"FIB-SEM","modality_family":"EM","lateral_resolution_nm":5.0,"axial_resolution_nm":5.0,"isotropic":true,"organelles":["nucleus","er","mitochondria","vacuole/lysosome","lipid droplets","golgi","vesicles"],"organelle_pairs":["er:golgi","er:lipid droplets","er:mitochondria","er:nucleus","er:vacuole/lysosome","er:vesicles","golgi:lipid droplets","golgi:mitochondria","golgi:nucleus","golgi:vacuole/lysosome","golgi:vesicles","lipid droplets:mitochondria","lipid droplets:nucleus","lipid droplets:vacuole/lysosome","lipid droplets:vesicles","mitochondria:nucleus","mitochondria:vacuole/lysosome","mitochondria:vesicles","nucleus:vacuole/lysosome","nucleus:vesicles","vacuole/lysosome:vesicles"],"metric_families":["volume","volume_fraction","dimensions"],"sample_size":1,"sample_size_bucket":"1","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"1 cell per resolution","source_study_id":"Wei 2012","publication_pmid":"22780318","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/22780318/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"wei-2012-065","title":"Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)","paper_title":"High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy.","year":2012,"source":"Biotechniques","source_type":"paper","public_data_status":"none","species":"Saccharomyces cerevisiae","cell_type":"Saccharomyces cerevisiae","tissue_or_system":null,"comparator_class":null,"comparator_detail":null,"modality":"FIB-SEM","modality_family":"EM","lateral_resolution_nm":3.72,"axial_resolution_nm":15.0,"isotropic":false,"organelles":["nucleus","er","mitochondria","vacuole/lysosome","lipid droplets","golgi","vesicles"],"organelle_pairs":["er:golgi","er:lipid droplets","er:mitochondria","er:nucleus","er:vacuole/lysosome","er:vesicles","golgi:lipid droplets","golgi:mitochondria","golgi:nucleus","golgi:vacuole/lysosome","golgi:vesicles","lipid droplets:mitochondria","lipid droplets:nucleus","lipid droplets:vacuole/lysosome","lipid droplets:vesicles","mitochondria:nucleus","mitochondria:vacuole/lysosome","mitochondria:vesicles","nucleus:vacuole/lysosome","nucleus:vesicles","vacuole/lysosome:vesicles"],"metric_families":["volume","volume_fraction","dimensions"],"sample_size":1,"sample_size_bucket":"1","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"1 cell per resolution","source_study_id":"Wei 2012","publication_pmid":"22780318","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/22780318/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"ramos-2011-007","title":"Trypanosoma cruzi whole-cell dataset (ssTEM)","paper_title":"Three-dimensional reconstruction of Trypanosoma cruzi epimastigotes and organelle distribution along the cell division cycle.","year":2011,"source":"Cytometry A","source_type":"paper","public_data_status":"none","species":"Trypanosoma cruzi","cell_type":"Trypanosoma cruzi","tissue_or_system":null,"comparator_class":"cell cycle","comparator_detail":"Cell Cycle","modality":"ssTEM","modality_family":"EM","lateral_resolution_nm":200.0,"axial_resolution_nm":200.0,"isotropic":true,"organelles":["nucleus","mitochondria","vesicles","flagella/cilia"],"organelle_pairs":["flagella/cilia:mitochondria","flagella/cilia:nucleus","flagella/cilia:vesicles","mitochondria:nucleus","mitochondria:vesicles","nucleus:vesicles"],"metric_families":["volume","count"],"sample_size":1,"sample_size_bucket":"1","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":null,"source_study_id":"Ramos 2011","publication_pmid":"21567937","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/21567937/","public_locator_urls":[],"included_status":"included"},{"dataset_id":"yamaguchi-2011-067","title":"Saccharomyces cerevisiae whole-cell dataset (ssTEM)","paper_title":"Structome of Saccharomyces cerevisiae determined by freeze-substitution and serial ultrathin-sectioning electron microscopy.","year":2011,"source":"J Electron Microsc (Tokyo)","source_type":"paper","public_data_status":"none","species":"Saccharomyces cerevisiae","cell_type":"Saccharomyces cerevisiae","tissue_or_system":null,"comparator_class":"cell cycle","comparator_detail":"Cell Cycle","modality":"ssTEM","modality_family":"EM","lateral_resolution_nm":30.0,"axial_resolution_nm":30.0,"isotropic":true,"organelles":["er","mitochondria","vacuole/lysosome","vesicles"],"organelle_pairs":["er:mitochondria","er:vacuole/lysosome","er:vesicles","mitochondria:vacuole/lysosome","mitochondria:vesicles","vacuole/lysosome:vesicles"],"metric_families":["volume","volume_fraction","dimensions","count","distance","contacts"],"sample_size":6,"sample_size_bucket":"2-10","metadata_completeness_score":0.95,"whole_cell_boundary_confirmed":"yes","notes":"(3 G1, 3 early G1)","source_study_id":"Yamaguchi 2011","publication_pmid":"21908548","source_publication_url":"https://pubmed.ncbi.nlm.nih.gov/21908548/","public_locator_urls":[],"included_status":"included"}]