Corpus
Search the Whole-Cell Imaging Corpus.
Filter the atlas, inspect records in card view, switch to table when you want a denser scan, and build a compare set from either view.
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Commonality Snapshot
A quick reading of the active result set. Click a trait to narrow the corpus to that subset; this is a frequency snapshot, not a quality ranking.
In this slice of the corpus, 29 dataset records match. SXT is the most common imaging family and nucleus is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is mitochondria:nucleus.
| Compare | Dataset | Cell Type | Modality | Voxel Size (XY/Z nm) | Sample Size | Data Publicly Available |
|---|---|---|---|---|---|---|
| M. musculus, alpha cell whole-cell dataset (SXT) Deshmukh et al., 2024, Cells · PMID 38786091 | M. musculus, alpha cell M. musculus | SXT | 38.25 x 38.25 nm voxel size (XY/Z, 3D) isotropic | 8 | None indexed | |
| M. musculus, beta cell whole-cell dataset (SXT) Deshmukh et al., 2024, Cells · PMID 38786091 | M. musculus, beta cell M. musculus | SXT | 38.25 x 38.25 nm voxel size (XY/Z, 3D) isotropic | 7 | None indexed | |
| Saccharomyces cerevisiae whole-cell dataset (SXT) Egebjerg et al., 2024, Autophagy · PMID 37908116 | Saccharomyces cerevisiae Saccharomyces cerevisiae | SXT | 19.9 x 19.9 nm voxel size (XY/Z, 3D) isotropic | 72 | None indexed | |
| Chlamydomonas reinhartdii whole-cell dataset (SXT) Xu et al., 2024, ACS Nano · PMID 38198284 | Chlamydomonas reinhartdii Chlamydomonas reinhartdii | SXT | 30 x 30 nm voxel size (XY/Z, 3D) isotropic | 12 | None indexed | |
| Candida utilis whole-cell dataset (SXT) Dang et al., 2023, ACS Nano · PMID 37156644 | Candida utilis Candida utilis | SXT | 30 x 30 nm voxel size (XY/Z, 3D) isotropic | 40 | None indexed | |
| B lymphocyte whole-cell dataset (SXT) Chen et al., 2022, Viruses · PMID 36560654 | B lymphocyte B lymphocyte | SXT | 60 x 60 nm voxel size (XY/Z, 3D) isotropic | 1 | None indexed | |
| INS-1E (R. norvegicus) whole-cell dataset (SXT) Li et al., 2022, PLoS One. · PMID 35324950 | INS-1E (R. norvegicus) Rodent | SXT | 60 x 60 nm voxel size (XY/Z, 3D) isotropic | 132 | None indexed | |
| INS-1E (R. norvegicus) whole-cell dataset (SXT) Loconte et al., 2022, Structure · PMID 35148829 | INS-1E (R. norvegicus) Rodent | SXT | 60 x 60 nm voxel size (XY/Z, 3D) isotropic | 56 | None indexed | |
| GM12878 (B lymphocyte) whole-cell dataset (SXT) Loconte et al., 2021, Cell Reports Methods · PMID 34729550 | GM12878 (B lymphocyte) Human (differentiated) | SXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 17 | None indexed | |
| HEK293T whole-cell dataset (SXT) Loconte et al., 2021, Cell Reports Methods · PMID 34729550 | HEK293T Human (cancerous) | SXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 3 | None indexed | |
| Babesia divergens whole-cell dataset (SXT) Conesa et al., 2020, mSphere · PMID 33055261 | Babesia divergens Babesia divergens | SXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 40 | None indexed | |
| INS-1E (R. norvegicus) whole-cell dataset (SXT) White et al., 2020, Science Advances · PMID 33298443 | INS-1E (R. norvegicus) Rodent | SXT | 60 x 60 nm voxel size (XY/Z, 3D) isotropic | 40 | None indexed | |
| Chlamydomonas reinhartdii whole-cell dataset (HXT (ptychography w/ fluorescence)) Deng et al., 2018, Science Advances · PMID 30406204 | Chlamydomonas reinhartdii Chlamydomonas reinhartdii | HXT (ptychography w/ fluorescence) | 85 x 97.5 nm voxel size (XY/Z, 3D) isotropic | 1 | None indexed | |
| Candida utilis whole-cell dataset (SXT) Liu et al., 2018, Journal of Microscopy · PMID 28960304 | Candida utilis Candida utilis | SXT | 30 x 30 nm voxel size (XY/Z, 3D) isotropic | 2 | None indexed | |
| M. musculus, macrophage whole-cell dataset (STXM) Yao et al., 2018, IUCrJ · PMID 29765603 | M. musculus, macrophage M. musculus | STXM | 77.5 x 50 nm voxel size (XY/Z, 3D) | 1 | None indexed | |
| HEK293T whole-cell dataset (SXT) Fogelqvist et al., 2017, Scientific Reports · PMID 29044158 | HEK293T Human (cancer) | SXT | 100 x 100 nm voxel size (XY/Z, 3D) isotropic | 2 | None indexed | |
| Chlamydomonas reinhartdii whole-cell dataset (HXT (ptychography)) Diaz et al., 2015, Journal of Structural Biology · PMID 26470812 | Chlamydomonas reinhartdii Chlamydomonas reinhartdii | HXT (ptychography) | 180 x 180 nm voxel size (XY/Z, 3D) isotropic | 3 | None indexed | |
| hESC (embryonic) whole-cell dataset (SXT) Niclis et al., 2015, J Royal Society Interface · PMID 26063819 | hESC (embryonic) Human (undifferentiated) | SXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 12 | None indexed | |
| hASC (adipose-derived) whole-cell dataset (SXT) Niclis et al., 2015, J Royal Society Interface · PMID 26063819 | hASC (adipose-derived) Human (undifferentiated) | SXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 12 | None indexed | |
| Neospora caninum whole-cell dataset (X-ray diffraction) Rodriguez et al., 2015, IUCrJ · PMID 26306199 | Neospora caninum Neospora caninum | X-ray diffraction | 86.5 x 86.5 nm voxel size (XY/Z, 3D) isotropic | 1 | None indexed | |
| Saccharomyces cerevisiae whole-cell dataset (SXT) Carlson et al., 2013, Microscopy and Microanalysis · PMID 23332214 | Saccharomyces cerevisiae Saccharomyces cerevisiae | SXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 1 | None indexed | |
| Plasmodium falciparum whole-cell dataset (SXT) Hanssen et al., 2013, Cellular Microbiology · PMID 23461734 | Plasmodium falciparum Plasmodium falciparum | SXT | Unknown | 32 | None indexed | |
| Chlamydomonas reinhartdii whole-cell dataset (SXT) Hummel et al., 2012, PLoS One · PMID 23300909 | Chlamydomonas reinhartdii Chlamydomonas reinhartdii | SXT | 40 x 40 nm voxel size (XY/Z, 3D) isotropic | 14 | None indexed | |
| Schizosaccharomyces pombe whole-cell dataset (HXT) Zheng et al., 2012, Microscopy research and technique · PMID 22505187 | Schizosaccharomyces pombe Schizosaccharomyces pombe | HXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 3 | None indexed | |
| Saccharomyces cerevisiae whole-cell dataset (SXT) Uchida et al., 2011, Yeast · PMID 21360734 | Saccharomyces cerevisiae Saccharomyces cerevisiae | SXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 200 | None indexed | |
| Schizosaccharomyces pombe whole-cell dataset (X-ray diffraction) Jiang et al., 2010, PNAS · PMID 20534442 | Schizosaccharomyces pombe Schizosaccharomyces pombe | X-ray diffraction | 55 x 55 nm voxel size (XY/Z, 3D) isotropic | 1 | None indexed | |
| Candida albicans whole-cell dataset (SXT) Uchida et al., 2009, Proc Natl Acad Sci USA · PMID 19880740 | Candida albicans Candida albicans | SXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 42 | None indexed | |
| Schizosaccharomyces pombe whole-cell dataset (SXT) Parkinson et al., 2008, Journal of Structural Biology · PMID 18387313 | Schizosaccharomyces pombe Schizosaccharomyces pombe | SXT | 20 x 20 nm voxel size (XY/Z, 3D) isotropic | 4 | None indexed | |
| Saccharomyces cerevisiae whole-cell dataset (SXT) Larabell et al., 2004, MBoC · PMID 14699066 | Saccharomyces cerevisiae Saccharomyces cerevisiae | SXT | 60 x 60 nm voxel size (XY/Z, 3D) isotropic | 3 | None indexed |
Compare Mode Preview
Comparison Summary
Moderate comparability; useful for targeted comparison with technical caveats.
This selection includes multiple dataset records from the same paper: Deshmukh 2024. Treat the result as an within-study alignment check, not independent cross-study validation.
Shared Fields
Cell Type: noneSpecies: M. musculusOrganelles: mitochondria, nucleus, vesiclesDerived Organelle Pairs: mitochondria:nucleus, mitochondria:vesicles, nucleus:vesiclesMetric Families: count, density, dimensions, surface_area, volume, volume_fractionComparator / Condition: cell typeModality Family: X-ray
Key Differences
Modality: SXTSample Size Band: 2-10Public Data Status: noneBoundary Confirmation: yes
Comparability Score:70 / 100
How It's Derived