Corpus
Search the Whole-Cell Imaging Corpus.
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Most Common Traits in This Slice
A quick snapshot of the active result set. Click a trait to narrow the corpus to that subset.
8 results filtered by organelle: er filtered by metric: contacts
In this slice of the corpus, 8 dataset records match. ssTEM is the most common imaging family and er is the organelle that appears most often with contacts as the most common metric family. The most common captured organelle pair is er:mitochondria.
| Compare | Dataset | Cell Type | Modality | Voxel Size (XY/Z nm) | Sample Size | Data Publicly Available |
|---|---|---|---|---|---|---|
| Saccharomyces cerevisiae whole-cell dataset (Fluorescence) Kichuk et al., 2024, Cell Reports Methods · PMID 38232737 | Saccharomyces cerevisiae Saccharomyces cerevisiae | Fluorescence | 141 x 373 nm voxel (XY/Z) | 90 | Not Indexed | |
| Encephalitozoon intestinalis whole-cell dataset (SBF-SEM) Antao et al., 2023, Nature Communications · PMID 37996434 | Encephalitozoon intestinalis Encephalitozoon intestinalis | SBF-SEM | 2 x 45 nm voxel (XY/Z) | 21 | Partial | |
| Vero (Cercopithecus aethiops) whole-cell dataset (SBF-SEM) Antao et al., 2023, Nature Communications · PMID 37996434 | Vero (Cercopithecus aethiops) NHP | SBF-SEM | 2 x 45 nm voxel (XY/Z) | 4 | Partial | |
| Salpingoeca rosetta whole-cell dataset (ssTEM) Laundon et al., 2019, PLOS Biology · PMID 30978201 | Salpingoeca rosetta Salpingoeca rosetta | ssTEM | Unknown | 6 | Partial | |
| Oscarella carmela, choanocytes whole-cell dataset (ssTEM) Laundon et al., 2019, PLOS Biology · PMID 30978201 | Oscarella carmela, choanocytes Oscarella carmela | ssTEM | Unknown | 5 | Partial | |
| COS-7 (Cercopithecus aethiops) whole-cell dataset (Fluorescence (LLS)) Valm et al., 2017, Nature · PMID 28538724 | COS-7 (Cercopithecus aethiops) NHP | Fluorescence (LLS) | 334.5 x 798 nm voxel (XY/Z) | 10 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (ssTEM) Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · PMID 21908548 | Saccharomyces cerevisiae Saccharomyces cerevisiae | ssTEM | 30 x 30 nm voxel (XY/Z) isotropic | 6 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (ssTEM) Perktold et al., 2007, FEMS Yeast Res · PMID 17419771 | Saccharomyces cerevisiae Saccharomyces cerevisiae | ssTEM | 30 x 80 nm voxel (XY/Z) | 2 | Not Indexed |
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Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: Saccharomyces cerevisiaespecies: Saccharomyces cerevisiaeorganelles: er, mitochondriaorganelle_pairs: er:mitochondriametric_families: contacts, distance, volume, volume_fractioncomparator_classes: nonemodality_families: none
Key Differences
modalities: Fluorescence, ssTEMsample_size_buckets: 2-10, 51+public_data_statuses: noneboundary_confirmation: yes
Comparability Score:62 / 100
How It's Derived