Corpus
Search the Whole-Cell Imaging Corpus.
Filter the atlas, inspect records in card view, switch to table when you want a denser scan, and build a compare set from either view.
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Table view is best for scanning fast. Cards give more context. Compare selection now works in both views, and the drawer follows you until you clear it or open Compare.
Most Common Traits in This Slice
A quick snapshot of the active result set. Click a trait to narrow the corpus to that subset.
3 results filtered by organelle: er filtered by metric: density
In this slice of the corpus, 3 dataset records match. FIB-SEM (IA-SEM) is the most common imaging family and er is the organelle that appears most often with density as the most common metric family. The most common captured organelle pair is er:mitochondria.
| Compare | Dataset | Cell Type | Modality | Voxel Size (XY/Z nm) | Sample Size | Data Publicly Available |
|---|---|---|---|---|---|---|
| Leishmania mexicana whole-cell dataset (SBF-SEM) Hair et al., 2024, PLOS Pathogens · PMID 38416776 | Leishmania mexicana Leishmania mexicana | SBF-SEM | 5 x 87.5 nm voxel (XY/Z) | 51 | Partial | |
| Schizosaccharomyces pombe whole-cell dataset (X-ray diffraction) Jiang et al., 2010, PNAS · PMID 20534442 | Schizosaccharomyces pombe Schizosaccharomyces pombe | X-ray diffraction | 55 x 55 nm voxel (XY/Z) isotropic | 1 | Not Indexed | |
| MNT-1 (melanoma) whole-cell dataset (FIB-SEM (IA-SEM)) Heymann et al., 2009, Journal of Structural Biology · PMID 19116171 | MNT-1 (melanoma) Human (cancer) | FIB-SEM (IA-SEM) | 12 x 30 nm voxel (XY/Z) | 1 | Not Indexed |
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Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: nonespecies: noneorganelles: er, mitochondria, nucleus, vacuole/lysosomeorganelle_pairs: er:mitochondria, er:nucleus, er:vacuole/lysosome, mitochondria:nucleus, mitochondria:vacuole/lysosome, nucleus:vacuole/lysosomemetric_families: density, dimensions, volume, volume_fractioncomparator_classes: cell cyclemodality_families: none
Key Differences
modalities: SBF-SEM, X-ray diffractionsample_size_buckets: 1, 51+public_data_statuses: none, partialboundary_confirmation: yes
Comparability Score:52 / 100
How It's Derived