Corpus
Search the Whole-Cell Imaging Corpus.
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Most Common Traits in This Slice
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12 results filtered by organelle: lipid droplets filtered by metric: dimensions
In this slice of the corpus, 12 dataset records match. FIB-SEM is the most common imaging family and lipid droplets is the organelle that appears most often with dimensions as the most common metric family. The most common captured organelle pair is lipid droplets:mitochondria.
| Compare | Dataset | Cell Type | Modality | Voxel Size (XY/Z nm) | Sample Size | Data Publicly Available |
|---|---|---|---|---|---|---|
| Leishmania mexicana whole-cell dataset (SBF-SEM) Hair et al., 2024, PLOS Pathogens · PMID 38416776 | Leishmania mexicana Leishmania mexicana | SBF-SEM | 5 x 87.5 nm voxel (XY/Z) | 51 | Partial | |
| Sanguina nivaloides whole-cell dataset (FIB-SEM) Ezzedine et al., 2023, Nature Communications · PMID 37980360 | Sanguina nivaloides Sanguina nivaloides | FIB-SEM | 9 x 9 nm voxel (XY/Z) isotropic | 2 | Complete | |
| Chlorella pyrenoidosa whole-cell dataset (FIB-SEM) Feng et al., 2023, Protoplasma · PMID 36416933 | Chlorella pyrenoidosa Chlorella pyrenoidosa | FIB-SEM | 2.44 x 8 nm voxel (XY/Z) | 9 | Not Indexed | |
| Lacrimia vacuolata whole-cell dataset (SBF-SEM) Tashyreva et al., 2023, mBio · PMID 37737610 | Lacrimia vacuolata Lacrimia vacuolata | SBF-SEM | 6 x 100 nm voxel (XY/Z) | 24 | Not Indexed | |
| Trypanosoma sp. 858 whole-cell dataset (FIB-SEM) Attias et al., 2022, Micron · PMID 34798356 | Trypanosoma sp. 858 Protist (parasitic protozoan) | FIB-SEM | Unknown | 1 | Not Indexed | |
| GM12878 (B lymphocyte) whole-cell dataset (SXT) Loconte et al., 2021, Cell Reports Methods · PMID 34729550 | GM12878 (B lymphocyte) Human (differentiated) | SXT | 50 x 50 nm voxel (XY/Z) isotropic | 17 | Not Indexed | |
| HEK293T whole-cell dataset (SXT) Loconte et al., 2021, Cell Reports Methods · PMID 34729550 | HEK293T Human (cancerous) | SXT | 50 x 50 nm voxel (XY/Z) isotropic | 3 | Not Indexed | |
| INS-1E (R. norvegicus) whole-cell dataset (SXT) White et al., 2020, Science Advances · PMID 33298443 | INS-1E (R. norvegicus) Rodent | SXT | 60 x 60 nm voxel (XY/Z) isotropic | 40 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wei et al., 2012, Biotechniques · PMID 22780318 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 3 x 3 nm voxel (XY/Z) isotropic | 1 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wei et al., 2012, Biotechniques · PMID 22780318 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 5 x 5 nm voxel (XY/Z) isotropic | 1 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wei et al., 2012, Biotechniques · PMID 22780318 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 3.72 x 15 nm voxel (XY/Z) | 1 | Not Indexed | |
| Schizosaccharomyces pombe whole-cell dataset (HXT) Zheng et al., 2012, Microscopy research and technique · PMID 22505187 | Schizosaccharomyces pombe Schizosaccharomyces pombe | HXT | 50 x 50 nm voxel (XY/Z) isotropic | 3 | Not Indexed |
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Example Compare Summary
High biological overlap with enough shared structure to justify direct comparison.
Shared Fields
cell_types: Saccharomyces cerevisiaespecies: Saccharomyces cerevisiaeorganelles: er, golgi, lipid droplets, mitochondria, nucleus, vacuole/lysosome, vesiclesorganelle_pairs: er:golgi, er:lipid droplets, er:mitochondria, er:nucleus, er:vacuole/lysosome, er:vesicles, golgi:lipid droplets, golgi:mitochondria, golgi:nucleus, golgi:vacuole/lysosome, golgi:vesicles, lipid droplets:mitochondria, lipid droplets:nucleus, lipid droplets:vacuole/lysosome, lipid droplets:vesicles, mitochondria:nucleus, mitochondria:vacuole/lysosome, mitochondria:vesicles, nucleus:vacuole/lysosome, nucleus:vesicles, vacuole/lysosome:vesiclesmetric_families: dimensions, volume, volume_fractioncomparator_classes: nonemodality_families: EM
Key Differences
modalities: FIB-SEMsample_size_buckets: 1public_data_statuses: noneboundary_confirmation: yes
Comparability Score:84 / 100
How It's Derived