Corpus
Search the Whole-Cell Imaging Corpus.
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Most Common Traits in This Slice
A quick snapshot of the active result set. Click a trait to narrow the corpus to that subset.
10 results filtered by organelle: er filtered by pair: er:lipid droplets
In this slice of the corpus, 10 dataset records match. FIB-SEM is the most common imaging family and er is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is er:lipid droplets.
| Compare | Dataset | Cell Type | Modality | Voxel Size (XY/Z nm) | Sample Size | Data Publicly Available |
|---|---|---|---|---|---|---|
| Leishmania mexicana whole-cell dataset (SBF-SEM) Hair et al., 2024, PLOS Pathogens · PMID 38416776 | Leishmania mexicana Leishmania mexicana | SBF-SEM | 5 x 87.5 nm voxel (XY/Z) | 51 | Partial | |
| Chlamydomonas reinhartdii whole-cell dataset (SXT) Xu et al., 2024, ACS Nano · PMID 38198284 | Chlamydomonas reinhartdii Chlamydomonas reinhartdii | SXT | 30 x 30 nm voxel (XY/Z) isotropic | 12 | Not Indexed | |
| Chlorella pyrenoidosa whole-cell dataset (FIB-SEM) Feng et al., 2023, Protoplasma · PMID 36416933 | Chlorella pyrenoidosa Chlorella pyrenoidosa | FIB-SEM | 2.44 x 8 nm voxel (XY/Z) | 9 | Not Indexed | |
| GM12878 (B lymphocyte) whole-cell dataset (SXT) Loconte et al., 2021, Cell Reports Methods · PMID 34729550 | GM12878 (B lymphocyte) Human (differentiated) | SXT | 50 x 50 nm voxel (XY/Z) isotropic | 17 | Not Indexed | |
| HEK293T whole-cell dataset (SXT) Loconte et al., 2021, Cell Reports Methods · PMID 34729550 | HEK293T Human (cancerous) | SXT | 50 x 50 nm voxel (XY/Z) isotropic | 3 | Not Indexed | |
| COS-7 (Cercopithecus aethiops) whole-cell dataset (Fluorescence (LLS)) Valm et al., 2017, Nature · PMID 28538724 | COS-7 (Cercopithecus aethiops) NHP | Fluorescence (LLS) | 334.5 x 798 nm voxel (XY/Z) | 10 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wei et al., 2012, Biotechniques · PMID 22780318 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 3 x 3 nm voxel (XY/Z) isotropic | 1 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wei et al., 2012, Biotechniques · PMID 22780318 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 5 x 5 nm voxel (XY/Z) isotropic | 1 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wei et al., 2012, Biotechniques · PMID 22780318 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 3.72 x 15 nm voxel (XY/Z) | 1 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (ssTEM) Perktold et al., 2007, FEMS Yeast Res · PMID 17419771 | Saccharomyces cerevisiae Saccharomyces cerevisiae | ssTEM | 30 x 80 nm voxel (XY/Z) | 2 | Not Indexed |
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Example Compare Summary
High biological overlap with enough shared structure to justify direct comparison.
Shared Fields
cell_types: Saccharomyces cerevisiaespecies: Saccharomyces cerevisiaeorganelles: er, golgi, lipid droplets, mitochondria, nucleus, vacuole/lysosome, vesiclesorganelle_pairs: er:golgi, er:lipid droplets, er:mitochondria, er:nucleus, er:vacuole/lysosome, er:vesicles, golgi:lipid droplets, golgi:mitochondria, golgi:nucleus, golgi:vacuole/lysosome, golgi:vesicles, lipid droplets:mitochondria, lipid droplets:nucleus, lipid droplets:vacuole/lysosome, lipid droplets:vesicles, mitochondria:nucleus, mitochondria:vacuole/lysosome, mitochondria:vesicles, nucleus:vacuole/lysosome, nucleus:vesicles, vacuole/lysosome:vesiclesmetric_families: dimensions, volume, volume_fractioncomparator_classes: nonemodality_families: EM
Key Differences
modalities: FIB-SEMsample_size_buckets: 1public_data_statuses: noneboundary_confirmation: yes
Comparability Score:84 / 100
How It's Derived