Saccharomyces cerevisiae whole-cell dataset (Fluorescence)
Kichuk et al., 2024, Cell Reports Methods · PMID 38232737 · Fluorescence
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In this slice of the corpus, 22 dataset records match. FIB-SEM is the most common imaging family and er is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is er:mitochondria.
Kichuk et al., 2024, Cell Reports Methods · PMID 38232737 · Fluorescence
Xu et al., 2024, ACS Nano · PMID 38198284 · SXT
Curation note: 6 ctrl + 6 AgNP-treated
Feng et al., 2023, Protoplasma · PMID 36416933 · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Loconte et al., 2021, Cell Reports Methods · PMID 34729550 · SXT
Loconte et al., 2021, Cell Reports Methods · PMID 34729550 · SXT
Hoffman et al., 2020, Science · PMID 31949053 · FIB-SEM
Cui et al., 2019, Nature Plants · PMID 30559414 · ET (cryo)
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Curation note: 1 of each cell type (see below); 3 time points for zebrafish neural progenitor
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Valm et al., 2017, Nature · PMID 28538724 · Fluorescence (LLS)
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · PMID 21908548 · ssTEM
Curation note: (3 G1, 3 early G1)
Jiang et al., 2010, PNAS · PMID 20534442 · X-ray diffraction
Heymann et al., 2009, Journal of Structural Biology · PMID 19116171 · FIB-SEM (IA-SEM)
Henderson et al., 2007, PLoS One · PMID 17710148 · ET (cryo)
Curation note: 10 (6 best cells used for quantitation) (52 imaged total); 23 dark-to-light transition; 29 light-to-dark transition;
Perktold et al., 2007, FEMS Yeast Res · PMID 17419771 · ssTEM
Curation note: at least one chemically fixed and one cryofixed
High biological overlap with enough shared structure to justify direct comparison.