Lacrimia vacuolata
Lacrimia vacuolata whole-cell dataset (SBF-SEM)
Tashyreva et al., 2023, mBio · SBF-SEM
ResSSBoundary
Key Organelles
nucleusmitochondrialipid droplets
Corpus
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20 results filtered by organelle: golgi filtered by pair: golgi:nucleus filtered by public data status: none
In this slice of the corpus, 20 dataset records match. SEM-AT is the most common imaging family and golgi is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is golgi:nucleus.
Card Tag Legend
ResResolution values are reported.
SSSample size is reported.
BoundaryWhole-cell boundary is confirmed.
Public DataReusable public data is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
R. norvegicus, hepatocyte
R. norvegicus, hepatocyte whole-cell dataset (SBF-SEM)
Johkura et al., 2022, Microscopy · SBF-SEM
ResSSBoundary
Key Organelles
nucleusgolgi
Curation note: 4 single-nuc, 4 binuc
Arabidopsis thaliana, cortical root
Arabidopsis thaliana, cortical root whole-cell dataset (ET (cryo))
Cui et al., 2019, Nature Plants · ET (cryo)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Danio rerio, neural progenitor cell
Danio rerio, neural progenitor cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 of each cell type (see below); 3 time points for zebrafish neural progenitor
Danio rerio, lens cell
Danio rerio, lens cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Danio rerio, skin cell
Danio rerio, skin cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Danio rerio, retinal neuroepithelial cell
Danio rerio, retinal neuroepithelial cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Trypanosoma brucei
Trypanosoma brucei whole-cell dataset (SBF-SEM)
Hughes et al., 2017, Journal of Cell Science · SBF-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriagolgi
Curation note: (different n's for each quant)
Danio rerio, "long process" cell
Danio rerio, "long process" cell whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Danio rerio, "cogwheel" cell
Danio rerio, "cogwheel" cell whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Danio rerio, thymus
Danio rerio, thymus whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Danio rerio, cytotoxic T cell
Danio rerio, cytotoxic T cell whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusermitochondria
Danio rerio, adrenal medulla neutrophil
Danio rerio, adrenal medulla neutrophil whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Haematococcus pluvialis
Haematococcus pluvialis whole-cell dataset (ssTEM)
Wayama et al., 2013, PLoS ONE · ssTEM
ResSSBoundary
Key Organelles
nucleusmitochondriachloroplast/plastid
Curation note: 1 coccoid cell, 1 cyst cell
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Plasmodium falciparum
Plasmodium falciparum whole-cell dataset (STEM)
Hohmann-Marriott et al., 2009, Nature Methods · STEM
ResSSBoundary
Key Organelles
nucleusvacuole/lysosomelipid droplets
M. musculus, beta cell
M. musculus, beta cell whole-cell dataset (ET (Cryo))
Noske et al., 2008, Journal of Structural Biology · ET (Cryo)
ResSSBoundary
Key Organelles
nucleusmitochondriagolgi
Ostreococcus tauri
Ostreococcus tauri whole-cell dataset (ET (cryo))
Henderson et al., 2007, PLoS One · ET (cryo)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 10 (6 best cells used for quantitation) (52 imaged total); 23 dark-to-light transition; 29 light-to-dark transition;
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Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: nonespecies: Danio rerioorganelles: er, golgi, mitochondria, nucleusorganelle_pairs: er:golgi, er:mitochondria, er:nucleus, golgi:mitochondria, golgi:nucleus, mitochondria:nucleusmetric_families: other, volume, volume_fractioncomparator_classes: cell cyclemodality_families: optical
Key Differences
modalities: Fluorescence (AO-LLSM)sample_size_buckets: 1public_data_statuses: noneboundary_confirmation: yes
Comparability Score:69 / 100
How It's Derived