Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (SXT)
Egebjerg et al., 2024, Autophagy · SXT
ResSSBoundary
Key Organelles
vacuole/lysosomelipid droplets
Corpus
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25 results filtered by organelle: lipid droplets filtered by public data status: none
In this slice of the corpus, 25 dataset records match. SXT is the most common imaging family and lipid droplets is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is lipid droplets:mitochondria.
Card Tag Legend
ResResolution values are reported.
SSSample size is reported.
BoundaryWhole-cell boundary is confirmed.
Public DataReusable public data is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
Chlamydomonas reinhartdii
Chlamydomonas reinhartdii whole-cell dataset (SXT)
Xu et al., 2024, ACS Nano · SXT
ResSSBoundary
Key Organelles
nucleuservacuole/lysosome
Curation note: 6 ctrl + 6 AgNP-treated
Candida utilis
Candida utilis whole-cell dataset (SXT)
Dang et al., 2023, ACS Nano · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Chlorella pyrenoidosa
Chlorella pyrenoidosa whole-cell dataset (FIB-SEM)
Feng et al., 2023, Protoplasma · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Lacrimia vacuolata
Lacrimia vacuolata whole-cell dataset (SBF-SEM)
Tashyreva et al., 2023, mBio · SBF-SEM
ResSSBoundary
Key Organelles
nucleusmitochondrialipid droplets
Trypanosoma sp. 858
Trypanosoma sp. 858 whole-cell dataset (FIB-SEM)
Attias et al., 2022, Micron · FIB-SEM
SSBoundary
Key Organelles
nucleuslipid dropletsflagella/cilia
Curation note: Unclear
B lymphocyte
B lymphocyte whole-cell dataset (SXT)
Chen et al., 2022, Viruses · SXT
ResSSBoundary
Key Organelles
nucleusmitochondrialipid droplets
Curation note: true whole-cell reconstruction
GM12878 (B lymphocyte)
GM12878 (B lymphocyte) whole-cell dataset (SXT)
Loconte et al., 2021, Cell Reports Methods · SXT
ResSSBoundary
Key Organelles
ermitochondrialipid droplets
HEK293T
HEK293T whole-cell dataset (SXT)
Loconte et al., 2021, Cell Reports Methods · SXT
ResSSBoundary
Key Organelles
ermitochondrialipid droplets
INS-1E (R. norvegicus)
INS-1E (R. norvegicus) whole-cell dataset (SXT)
White et al., 2020, Science Advances · SXT
ResSSBoundary
Key Organelles
nucleusmitochondrialipid droplets
Curation note: 8 x 5 conditions
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wu et al., 2020, Structure · FIB-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"
Candida utilis
Candida utilis whole-cell dataset (SXT)
Liu et al., 2018, Journal of Microscopy · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 1 G1 and 1 budding
Mm2T (Muntiacus muntjak)
Mm2T (Muntiacus muntjak) whole-cell dataset (ET)
Okumura et al., 2018, Micron · ET
SSBoundary
Key Organelles
mitochondrialipid droplets
COS-7 (Cercopithecus aethiops)
COS-7 (Cercopithecus aethiops) whole-cell dataset (Fluorescence (LLS))
Valm et al., 2017, Nature · Fluorescence (LLS)
ResSSBoundary
Key Organelles
ermitochondriavacuole/lysosome
Parachlorella kessleri
Parachlorella kessleri whole-cell dataset (ssTEM)
Ota et al., 2016, Biotechnology for Biofuels · ssTEM
SSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 1 per condition
Chlamydomonas reinhartdii
Chlamydomonas reinhartdii whole-cell dataset (HXT (ptychography))
Diaz et al., 2015, Journal of Structural Biology · HXT (ptychography)
ResSSBoundary
Key Organelles
nucleusvacuole/lysosomelipid droplets
Chlamydomonas reinhartdii
Chlamydomonas reinhartdii whole-cell dataset (SXT)
Hummel et al., 2012, PLoS One · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: (6 wt; 8 mutant)
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Schizosaccharomyces pombe
Schizosaccharomyces pombe whole-cell dataset (HXT)
Zheng et al., 2012, Microscopy research and technique · HXT
ResSSBoundary
Key Organelles
mitochondriavacuole/lysosomelipid droplets
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (SXT)
Uchida et al., 2011, Yeast · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Plasmodium falciparum
Plasmodium falciparum whole-cell dataset (STEM)
Hohmann-Marriott et al., 2009, Nature Methods · STEM
ResSSBoundary
Key Organelles
nucleusvacuole/lysosomelipid droplets
Candida albicans
Candida albicans whole-cell dataset (SXT)
Uchida et al., 2009, Proc Natl Acad Sci USA · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: split between yeast-like and germ tube (life cycle)
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (ssTEM)
Perktold et al., 2007, FEMS Yeast Res · ssTEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: at least one chemically fixed and one cryofixed
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Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: Saccharomyces cerevisiaespecies: Saccharomyces cerevisiaeorganelles: lipid droplets, vacuole/lysosomeorganelle_pairs: lipid droplets:vacuole/lysosomemetric_families: nonecomparator_classes: nonemodality_families: none
Key Differences
modalities: FIB-SEM, SXTsample_size_buckets: 1, 51+public_data_statuses: noneboundary_confirmation: yes
Comparability Score:50 / 100
How It's Derived