Corpus
Search the Whole-Cell Imaging Corpus.
Filter the atlas, inspect records in card view, switch to table when you want a denser scan, and build a compare set from either view.
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Table view is best for scanning fast. Cards give more context. Compare selection now works in both views, and the drawer follows you until you clear it or open Compare.
Commonality Snapshot
A quick reading of the active result set. Click a trait to narrow the corpus to that subset; this is a frequency snapshot, not a quality ranking.
21 results filtered by organelle: nucleus filtered by pair: lipid droplets:nucleus
In this slice of the corpus, 21 dataset records match. SXT is the most common imaging family and lipid droplets is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is lipid droplets:nucleus.
| Compare | Dataset | Cell Type | Modality | Voxel Size (XY/Z nm) | Sample Size | Data Publicly Available |
|---|---|---|---|---|---|---|
| Leishmania mexicana whole-cell dataset (SBF-SEM) Hair et al., 2024, PLOS Pathogens · PMID 38416776 | Leishmania mexicana Leishmania mexicana | SBF-SEM | 5 x 87.5 nm voxel size (XY/Z, 3D) | 51 | Partial | |
| Chlamydomonas reinhartdii whole-cell dataset (SXT) Xu et al., 2024, ACS Nano · PMID 38198284 | Chlamydomonas reinhartdii Chlamydomonas reinhartdii | SXT | 30 x 30 nm voxel size (XY/Z, 3D) isotropic | 12 | None indexed | |
| Candida utilis whole-cell dataset (SXT) Dang et al., 2023, ACS Nano · PMID 37156644 | Candida utilis Candida utilis | SXT | 30 x 30 nm voxel size (XY/Z, 3D) isotropic | 40 | None indexed | |
| Sanguina nivaloides whole-cell dataset (FIB-SEM) Ezzedine et al., 2023, Nature Communications · PMID 37980360 | Sanguina nivaloides Sanguina nivaloides | FIB-SEM | 9 x 9 nm voxel size (XY/Z, 3D) isotropic | 2 | Complete | |
| Chlorella pyrenoidosa whole-cell dataset (FIB-SEM) Feng et al., 2023, Protoplasma · PMID 36416933 | Chlorella pyrenoidosa Chlorella pyrenoidosa | FIB-SEM | 2.44 x 8 nm voxel size (XY/Z, 3D) | 9 | None indexed | |
| Lacrimia vacuolata whole-cell dataset (SBF-SEM) Tashyreva et al., 2023, mBio · PMID 37737610 | Lacrimia vacuolata Lacrimia vacuolata | SBF-SEM | 6 x 100 nm voxel size (XY/Z, 3D) | 24 | None indexed | |
| Trypanosoma sp. 858 whole-cell dataset (FIB-SEM) Attias et al., 2022, Micron · PMID 34798356 | Trypanosoma sp. 858 Protist (parasitic protozoan) | FIB-SEM | Unknown | 1 | None indexed | |
| B lymphocyte whole-cell dataset (SXT) Chen et al., 2022, Viruses · PMID 36560654 | B lymphocyte B lymphocyte | SXT | 60 x 60 nm voxel size (XY/Z, 3D) isotropic | 1 | None indexed | |
| INS-1E (R. norvegicus) whole-cell dataset (SXT) White et al., 2020, Science Advances · PMID 33298443 | INS-1E (R. norvegicus) Rodent | SXT | 60 x 60 nm voxel size (XY/Z, 3D) isotropic | 40 | None indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wu et al., 2020, Structure · PMID 32814034 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 17.39 x 17.39 nm voxel size (XY/Z, 3D) isotropic | 1 | None indexed | |
| Candida utilis whole-cell dataset (SXT) Liu et al., 2018, Journal of Microscopy · PMID 28960304 | Candida utilis Candida utilis | SXT | 30 x 30 nm voxel size (XY/Z, 3D) isotropic | 2 | None indexed | |
| Parachlorella kessleri whole-cell dataset (ssTEM) Ota et al., 2016, Biotechnology for Biofuels · PMID 26811738 | Parachlorella kessleri Parachlorella kessleri | ssTEM | Unknown | 3 | None indexed | |
| Chlamydomonas reinhartdii whole-cell dataset (HXT (ptychography)) Diaz et al., 2015, Journal of Structural Biology · PMID 26470812 | Chlamydomonas reinhartdii Chlamydomonas reinhartdii | HXT (ptychography) | 180 x 180 nm voxel size (XY/Z, 3D) isotropic | 3 | None indexed | |
| Chlamydomonas reinhartdii whole-cell dataset (SXT) Hummel et al., 2012, PLoS One · PMID 23300909 | Chlamydomonas reinhartdii Chlamydomonas reinhartdii | SXT | 40 x 40 nm voxel size (XY/Z, 3D) isotropic | 14 | None indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wei et al., 2012, Biotechniques · PMID 22780318 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 3 x 3 nm voxel size (XY/Z, 3D) isotropic | 1 | None indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wei et al., 2012, Biotechniques · PMID 22780318 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 5 x 5 nm voxel size (XY/Z, 3D) isotropic | 1 | None indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wei et al., 2012, Biotechniques · PMID 22780318 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 3.72 x 15 nm voxel size (XY/Z, 3D) | 1 | None indexed | |
| Saccharomyces cerevisiae whole-cell dataset (SXT) Uchida et al., 2011, Yeast · PMID 21360734 | Saccharomyces cerevisiae Saccharomyces cerevisiae | SXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 200 | None indexed | |
| Plasmodium falciparum whole-cell dataset (STEM) Hohmann-Marriott et al., 2009, Nature Methods · PMID 19718033 | Plasmodium falciparum Plasmodium falciparum | STEM | 1.9 x 20 nm voxel size (XY/Z, 3D) | 1 | None indexed | |
| Candida albicans whole-cell dataset (SXT) Uchida et al., 2009, Proc Natl Acad Sci USA · PMID 19880740 | Candida albicans Candida albicans | SXT | 50 x 50 nm voxel size (XY/Z, 3D) isotropic | 42 | None indexed | |
| Saccharomyces cerevisiae whole-cell dataset (ssTEM) Perktold et al., 2007, FEMS Yeast Res · PMID 17419771 | Saccharomyces cerevisiae Saccharomyces cerevisiae | ssTEM | 30 x 80 nm voxel size (XY/Z, 3D) | 2 | None indexed |
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Comparison Summary
High biological overlap with enough shared structure to justify direct comparison.
Shared Fields
Cell Type: Chlamydomonas reinhartdiiSpecies: Chlamydomonas reinhartdiiOrganelles: lipid droplets, nucleus, vacuole/lysosomeDerived Organelle Pairs: lipid droplets:nucleus, lipid droplets:vacuole/lysosome, nucleus:vacuole/lysosomeMetric Families: noneComparator / Condition: treatmentModality Family: X-ray
Key Differences
Modality: HXT (ptychography), SXTSample Size Band: 11-50, 2-10Public Data Status: noneBoundary Confirmation: yes
Comparability Score:80 / 100
How It's Derived