H446 (lung cancer)
H446 (lung cancer) whole-cell dataset (SBF-SEM)
Jadav et al., 2023, Journal of Structural Biology · PMID 37805154 · SBF-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
Corpus
Search the Whole-Cell Imaging Corpus.
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Commonality Snapshot
A quick reading of the active result set. Click a trait to narrow the corpus to that subset; this is a frequency snapshot, not a quality ranking.
11 results filtered by organelle: vesicles filtered by family: EM filtered by pair: mitochondria:vesicles
In this slice of the corpus, 11 dataset records match. FIB-SEM is the most common imaging family and mitochondria is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is mitochondria:vesicles.
Card Tag Legend
ResThree-dimensional voxel size is reported.
SSSample size is reported.
BoundaryWhole-cell boundary confirmation is present.
Public DataA reusable public-data locator is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
Pelagomonas
Pelagomonas whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, Nature Communications · PMID 33594064 · FIB-SEM
ResSSBoundaryPublic Data: Partial
Key Organelles
nucleusmitochondriachloroplast/plastid
Curation note: Some public data available.
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wu et al., 2020, Structure · PMID 32814034 · FIB-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"
Salpingoeca rosetta
Salpingoeca rosetta whole-cell dataset (ssTEM)
Laundon et al., 2019, PLOS Biology · PMID 30978201 · ssTEM
SSBoundaryPublic Data: Partial
Key Organelles
nucleusermitochondria
Curation note: Some public data available. 3 colonial, 3 single
Plasmodium falciparum
Plasmodium falciparum whole-cell dataset (SBF-SEM)
Sakaguchi et al., 2016, Journal of Structural Biology · PMID 26772147 · SBF-SEM
ResSSBoundaryPublic Data: Partial
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles
Trypanosoma brucei
Trypanosoma brucei whole-cell dataset (SBF-SEM)
Gluenz et al., 2015, Methods in Cell Biology · PMID 25837406 · SBF-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
Curation note: Fig 9. original data
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Trypanosoma cruzi
Trypanosoma cruzi whole-cell dataset (ssTEM)
Ramos et al., 2011, Cytometry A · PMID 21567937 · ssTEM
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (ssTEM)
Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · PMID 21908548 · ssTEM
ResSSBoundary
Key Organelles
ermitochondriavacuole/lysosome
Curation note: (3 G1, 3 early G1)
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Comparison Summary
High biological overlap with enough shared structure to justify direct comparison.
Shared Fields
Cell Type: Saccharomyces cerevisiaeSpecies: Saccharomyces cerevisiaeOrganelles: lipid droplets, mitochondria, nucleus, vacuole/lysosome, vesiclesDerived Organelle Pairs: lipid droplets:mitochondria, lipid droplets:nucleus, lipid droplets:vacuole/lysosome, lipid droplets:vesicles, mitochondria:nucleus, mitochondria:vacuole/lysosome, mitochondria:vesicles, nucleus:vacuole/lysosome, nucleus:vesicles, vacuole/lysosome:vesiclesMetric Families: noneComparator / Condition: methodologyModality Family: EM
Key Differences
Modality: FIB-SEMSample Size Band: 1Public Data Status: noneBoundary Confirmation: yes
Comparability Score:85 / 100
How It's Derived