Arabidopsis thaliana, mesophyll
Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM)
Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 · FESEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 3L, 3D
Corpus
Search the Whole-Cell Imaging Corpus.
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Commonality Snapshot
A quick reading of the active result set. Click a trait to narrow the corpus to that subset; this is a frequency snapshot, not a quality ranking.
4 results filtered by organelle: chloroplast/plastid filtered by metric: other filtered by pair: chloroplast/plastid:vacuole/lysosome
In this slice of the corpus, 4 dataset records match. ET (cryo) is the most common imaging family and chloroplast/plastid is the organelle that appears most often with other as the most common metric family. The most common captured organelle pair is chloroplast/plastid:vacuole/lysosome.
Card Tag Legend
ResThree-dimensional voxel size is reported.
SSSample size is reported.
BoundaryWhole-cell boundary confirmation is present.
Public DataA reusable public-data locator is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
Brandtodinium nutricula
Brandtodinium nutricula whole-cell dataset (FIB-SEM)
Decelle et al., 2021, Environmental Microbiology · PMID 34499794 · FIB-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 3 free-living, 4 symbiotic
Cylindrotheca sp.
Cylindrotheca sp. whole-cell dataset (Optical tomography (diffraction))
Umemura et al., 2020, MethodsX · PMID 32382522 · Optical tomography (diffraction)
ResSSBoundary
Key Organelles
vacuole/lysosomechloroplast/plastid
Arabidopsis thaliana, cortical root
Arabidopsis thaliana, cortical root whole-cell dataset (ET (cryo))
Cui et al., 2019, Nature Plants · PMID 30559414 · ET (cryo)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
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Comparison Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
Cell Type: noneSpecies: noneOrganelles: chloroplast/plastid, mitochondria, nucleus, vacuole/lysosomeDerived Organelle Pairs: chloroplast/plastid:mitochondria, chloroplast/plastid:nucleus, chloroplast/plastid:vacuole/lysosome, mitochondria:nucleus, mitochondria:vacuole/lysosome, nucleus:vacuole/lysosomeMetric Families: other, surface_area, volume, volume_fractionComparator / Condition: noneModality Family: EM
Key Differences
Modality: FESEM, FIB-SEMSample Size Band: 2-10Public Data Status: noneBoundary Confirmation: yes
Comparability Score:52 / 100
How It's Derived