GM12878 (B lymphocyte)
GM12878 (B lymphocyte) whole-cell dataset (SXT)
Loconte et al., 2021, Cell Reports Methods · SXT
ResSSBoundary
Key Organelles
ermitochondrialipid droplets
Corpus
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9 results filtered by organelle: er filtered by metric: other
In this slice of the corpus, 9 dataset records match. Fluorescence (AO-LLSM) is the most common imaging family and er is the organelle that appears most often with other as the most common metric family. The most common captured organelle pair is er:mitochondria.
Card Tag Legend
ResResolution values are reported.
SSSample size is reported.
BoundaryWhole-cell boundary is confirmed.
Public DataReusable public data is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
HEK293T
HEK293T whole-cell dataset (SXT)
Loconte et al., 2021, Cell Reports Methods · SXT
ResSSBoundary
Key Organelles
ermitochondrialipid droplets
Arabidopsis thaliana, cortical root
Arabidopsis thaliana, cortical root whole-cell dataset (ET (cryo))
Cui et al., 2019, Nature Plants · ET (cryo)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Danio rerio, neural progenitor cell
Danio rerio, neural progenitor cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 of each cell type (see below); 3 time points for zebrafish neural progenitor
Danio rerio, lens cell
Danio rerio, lens cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Danio rerio, skin cell
Danio rerio, skin cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Danio rerio, retinal neuroepithelial cell
Danio rerio, retinal neuroepithelial cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Danio rerio, thymus
Danio rerio, thymus whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Danio rerio, cytotoxic T cell
Danio rerio, cytotoxic T cell whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusermitochondria
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Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: nonespecies: Danio rerioorganelles: er, golgi, mitochondria, nucleusorganelle_pairs: er:golgi, er:mitochondria, er:nucleus, golgi:mitochondria, golgi:nucleus, mitochondria:nucleusmetric_families: other, volume, volume_fractioncomparator_classes: cell cyclemodality_families: optical
Key Differences
modalities: Fluorescence (AO-LLSM)sample_size_buckets: 1public_data_statuses: noneboundary_confirmation: yes
Comparability Score:69 / 100
How It's Derived