Search the Whole-Cell Imaging Corpus.

M. musculus, alpha cell whole-cell dataset (SXT)

Deshmukh et al., 2024, Cells · SXT

Curation note: 8 alpha, 7 beta

M. musculus, beta cell whole-cell dataset (SXT)

Deshmukh et al., 2024, Cells · SXT

Saccharomyces cerevisiae whole-cell dataset (SXT)

Egebjerg et al., 2024, Autophagy · SXT

Leishmania mexicana whole-cell dataset (SBF-SEM)

Hair et al., 2024, PLOS Pathogens · SBF-SEM

Curation note: Some public data available. 41 in vitro, 10 sand fly-derived

Saccharomyces cerevisiae whole-cell dataset (Fluorescence)

Kichuk et al., 2024, Cell Reports Methods · Fluorescence

Chlamydomonas reinhartdii whole-cell dataset (SXT)

Xu et al., 2024, ACS Nano · SXT

Curation note: 6 ctrl + 6 AgNP-treated

Encephalitozoon intestinalis whole-cell dataset (SBF-SEM)

Antao et al., 2023, Nature Communications · SBF-SEM

Curation note: Some public data available. 21+ E.i. ("A minimum of 7 parasites were segmented completely per condition" [sporonts, sporoblasts, spores])

Vero (Cercopithecus aethiops) whole-cell dataset (SBF-SEM)

Antao et al., 2023, Nature Communications · SBF-SEM

Curation note: Some public data available. 4 Vero (inc PV, Fig 5)

Saccharomyces cerevisiae whole-cell dataset (Optical tomography (phase contrast))

Bianco et al., 2023, Small Methods · Optical tomography (phase contrast)

HeLa whole-cell dataset (Optical tomography (diffraction))

Cho et al., 2023, Analytical Chemistry · Optical tomography (diffraction)

Curation note: (nucleus + autophagosome, Fig 5C, originally thought we'd include Fig 7 but cells appear to be cut off)

Candida utilis whole-cell dataset (SXT)

Dang et al., 2023, ACS Nano · SXT

Sanguina nivaloides whole-cell dataset (FIB-SEM)

Ezzedine et al., 2023, Nature Communications · FIB-SEM

Curation note: Public data available. 1 chemically fixed, 1 cryo-fixed

Chlorella pyrenoidosa whole-cell dataset (FIB-SEM)

Feng et al., 2023, Protoplasma · FIB-SEM

Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction

H446 (lung cancer) whole-cell dataset (SBF-SEM)

Jadav et al., 2023, Journal of Structural Biology · SBF-SEM

Toxoplasma gondii whole-cell dataset (Optical tomography (diffraction))

Koutsogiannis et al., 2023, Frontiers in Cellular and Infection Microbiology · Optical tomography (diffraction)

Curation note: 1 WT, 2 cerS1 mutant

platelet whole-cell dataset (FIB-SEM)

Matharu et al., 2023, Platelets · FIB-SEM

Curation note: 63 including mito (606 total cell+AGl, 300 Ctrl, 306 COVID)

Danio rerio, hair cells whole-cell dataset (SBF-SEM)

McQuate et al., 2023, eLife · SBF-SEM

Curation note: Some public data available.

Danio rerio, supporting cells whole-cell dataset (SBF-SEM)

McQuate et al., 2023, eLife · SBF-SEM

Curation note: Some public data available.

Arabidopsis thaliana, guard cell whole-cell dataset (Fluorescence)

Mirasole et al., 2023, Scientific Reports · Fluorescence

Ensiculifera tyrrhenica whole-cell dataset (FIB-SEM)

Mocaer et al., 2023, Journal of Cell Science · FIB-SEM

Curation note: Some public data available.

Lacrimia vacuolata whole-cell dataset (SBF-SEM)

Tashyreva et al., 2023, mBio · SBF-SEM

MCF10A (breast epithelia) whole-cell dataset (Fluorescence)

Wang et al., 2023, iScience · Fluorescence

MDA231 (breast cancer) whole-cell dataset (Fluorescence)

Wang et al., 2023, iScience · Fluorescence

Curation note: 10 cells per 4 cell lines per 2 culture conditions

T47D (breast cancer) whole-cell dataset (Fluorescence)

Wang et al., 2023, iScience · Fluorescence

AU565 (breast cancer) whole-cell dataset (Fluorescence)

Wang et al., 2023, iScience · Fluorescence

Trypanosoma sp. 858 whole-cell dataset (FIB-SEM)

Attias et al., 2022, Micron · FIB-SEM

Curation note: Unclear

Eimeria tenella whole-cell dataset (SBF-SEM)

Burrell et al., 2022, PLoS Pathogens · SBF-SEM

B lymphocyte whole-cell dataset (SXT)

Chen et al., 2022, Viruses · SXT

Curation note: true whole-cell reconstruction

R. norvegicus, hepatocyte whole-cell dataset (SBF-SEM)

Johkura et al., 2022, Microscopy · SBF-SEM

Curation note: 4 single-nuc, 4 binuc

INS-1E (R. norvegicus) whole-cell dataset (SXT)

Li et al., 2022, PLoS One. · SXT

Curation note: 40 tomograms from SXT extended to 132. unsure if those original 40 are included in the 132. 3 for analysis

INS-1E (R. norvegicus) whole-cell dataset (SXT)

Loconte et al., 2022, Structure · SXT

Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM)

Midorikawa et al., 2022, PNAS Nexus · FESEM

Curation note: 3L, 3D

Nicotiana tabacum whole-cell dataset (FIB-SEM)

Zechmann et al., 2022, Planta · FIB-SEM

Nicotiana tabacum whole-cell dataset (ssTEM)

Zechmann et al., 2022, Planta · ssTEM

Cucurbita pepo whole-cell dataset (FIB-SEM)

Zechmann et al., 2022, Planta · FIB-SEM

Cucurbita pepo whole-cell dataset (ssTEM)

Zechmann et al., 2022, Planta · ssTEM

Brandtodinium nutricula whole-cell dataset (FIB-SEM)

Decelle et al., 2021, Environmental Microbiology · FIB-SEM

Curation note: 3 free-living, 4 symbiotic

GM12878 (B lymphocyte) whole-cell dataset (SXT)

Loconte et al., 2021, Cell Reports Methods · SXT

HEK293T whole-cell dataset (SXT)

Loconte et al., 2021, Cell Reports Methods · SXT

M. musculus, beta cell whole-cell dataset (FIB-SEM)

Muller et al., 2021, Journal of Cell Biology · FIB-SEM

Curation note: Some public data available. 3 low-glucose, 4 high-glucose

C57BL/6 (M. musculus) whole-cell dataset (SBF-SEM)

Pokrovskaya et al., 2021, Platelets · SBF-SEM

Micromonas whole-cell dataset (FIB-SEM)

Uwizeye et al., 2021, Nature Communications · FIB-SEM

Curation note: Some public data available. 3 cells per species

Emiliana whole-cell dataset (FIB-SEM)

Uwizeye et al., 2021, Nature Communications · FIB-SEM

Curation note: Some public data available.

Symbiodinium whole-cell dataset (FIB-SEM)

Uwizeye et al., 2021, Nature Communications · FIB-SEM

Curation note: Some public data available.

Galdieria whole-cell dataset (FIB-SEM)

Uwizeye et al., 2021, Nature Communications · FIB-SEM

Curation note: Some public data available.

Phaeodactylum whole-cell dataset (FIB-SEM)

Uwizeye et al., 2021, Nature Communications · FIB-SEM

Curation note: Some public data available.

Nannochloropsis whole-cell dataset (FIB-SEM)

Uwizeye et al., 2021, Nature Communications · FIB-SEM

Curation note: Some public data available.

Pelagomonas whole-cell dataset (FIB-SEM)

Uwizeye et al., 2021, Nature Communications · FIB-SEM

Curation note: Some public data available.

Phaeocystis cordata whole-cell dataset (FIB-SEM)

Uwizeye et al., 2021, PNAS · FIB-SEM

Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))

Babesia divergens whole-cell dataset (SXT)

Conesa et al., 2020, mSphere · SXT

Curation note: at least 40 parasites in 19 RBCs, counted from Fig 4, couldn’t find SS stated in text;

COS-7 (Cercopithecus aethiops) whole-cell dataset (FIB-SEM)

Hoffman et al., 2020, Science · FIB-SEM

RPE (retinal epithelia) whole-cell dataset (SBF-SEM)

Pollreisz et al., 2020, Invest Ophthalmol Vis Sci. · SBF-SEM

Plasmodium falciparum whole-cell dataset (FIB-SEM)

Rudlaff et al., 2020, PLOS Pathogens · FIB-SEM

Curation note: Some public data available.

Cylindrotheca sp. whole-cell dataset (Optical tomography (diffraction))

Umemura et al., 2020, MethodsX · Optical tomography (diffraction)

INS-1E (R. norvegicus) whole-cell dataset (SXT)

White et al., 2020, Science Advances · SXT

Curation note: 8 x 5 conditions

Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)

Wu et al., 2020, Structure · FIB-SEM

Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"

Arabidopsis thaliana, cortical root whole-cell dataset (ET (cryo))

Cui et al., 2019, Nature Plants · ET (cryo)

Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only

Phaeocystis cordata whole-cell dataset (FIB-SEM)

Decelle et al., 2019, Current Biology · FIB-SEM

Curation note: 8 symbiotic, 10 free-living; 2 representative cells shown

Salpingoeca rosetta whole-cell dataset (ssTEM)

Laundon et al., 2019, PLOS Biology · ssTEM

Curation note: Some public data available. 3 colonial, 3 single

Oscarella carmela, choanocytes whole-cell dataset (ssTEM)

Laundon et al., 2019, PLOS Biology · ssTEM

Curation note: Some public data available.

platelet whole-cell dataset (SBF-SEM)

Pokrovskaya et al., 2019, Res Pract Thromb Haemost · SBF-SEM

Chlamydomonas reinhartdii whole-cell dataset (HXT (ptychography w/ fluorescence))

Deng et al., 2018, Science Advances · HXT (ptychography w/ fluorescence)

Candida utilis whole-cell dataset (SXT)

Liu et al., 2018, Journal of Microscopy · SXT

Curation note: 1 G1 and 1 budding

Danio rerio, neural progenitor cell whole-cell dataset (Fluorescence (AO-LLSM))

Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)

Curation note: 1 of each cell type (see below); 3 time points for zebrafish neural progenitor

Danio rerio, lens cell whole-cell dataset (Fluorescence (AO-LLSM))

Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)

Danio rerio, skin cell whole-cell dataset (Fluorescence (AO-LLSM))

Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)

Danio rerio, retinal neuroepithelial cell whole-cell dataset (Fluorescence (AO-LLSM))

Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)

Mm2T (Muntiacus muntjak) whole-cell dataset (ET)

Okumura et al., 2018, Micron · ET

M. musculus, macrophage whole-cell dataset (STXM)

Yao et al., 2018, IUCrJ · STXM

Trypanosoma (currawong) whole-cell dataset (FIB-SEM)

Cooper et al., 2017, Parasites & Vectors · FIB-SEM

Curation note: 2 full reconstructions; quants from 25 cells, only kinetoplasts segmented

HEK293T whole-cell dataset (SXT)

Fogelqvist et al., 2017, Scientific Reports · SXT

Trypanosoma brucei whole-cell dataset (SBF-SEM)

Hughes et al., 2017, Journal of Cell Science · SBF-SEM

Curation note: (different n's for each quant)

J774A.1 (M. musculus) whole-cell dataset (Optical tomography (LCCT))

Kelbauskas et al., 2017, Science Advances · Optical tomography (LCCT)

K562 (leukemia) whole-cell dataset (Optical tomography (LCCT))

Kelbauskas et al., 2017, Science Advances · Optical tomography (LCCT)

Oryza sativa, mesophyll whole-cell dataset (FIB-SEM)

Oi et al., 2017, Annals of Botany · FIB-SEM

Curation note: 1 visible 3D reconstruction, 2 addtl in supp movies (chloroplast counts)

COS-7 (Cercopithecus aethiops) whole-cell dataset (Fluorescence (LLS))

Valm et al., 2017, Nature · Fluorescence (LLS)

Penaeus monodon whole-cell dataset (SBF-SEM)

Feng et al., 2016, Journal of Morphology · SBF-SEM

Curation note: Randomly selected spermatozoa

Parachlorella kessleri whole-cell dataset (ssTEM)

Ota et al., 2016, Biotechnology for Biofuels · ssTEM

Curation note: 1 per condition

Plasmodium falciparum whole-cell dataset (SBF-SEM)

Sakaguchi et al., 2016, Journal of Structural Biology · SBF-SEM

Curation note: Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles

Chlamydomonas reinhartdii whole-cell dataset (HXT (ptychography))

Diaz et al., 2015, Journal of Structural Biology · HXT (ptychography)

Trypanosoma brucei whole-cell dataset (SBF-SEM)

Gluenz et al., 2015, Methods in Cell Biology · SBF-SEM

Curation note: Fig 9. original data

hESC (embryonic) whole-cell dataset (SXT)

Niclis et al., 2015, J Royal Society Interface · SXT

hASC (adipose-derived) whole-cell dataset (SXT)

Niclis et al., 2015, J Royal Society Interface · SXT

Neospora caninum whole-cell dataset (X-ray diffraction)

Rodriguez et al., 2015, IUCrJ · X-ray diffraction

Danio rerio, "long process" cell whole-cell dataset (SEM-AT)

Wacker et al., 2015, Journal of Microscopy · SEM-AT

Danio rerio, "cogwheel" cell whole-cell dataset (SEM-AT)

Wacker et al., 2015, Journal of Microscopy · SEM-AT

Danio rerio, thymus whole-cell dataset (SEM-AT)

Wacker et al., 2015, Journal of Microscopy · SEM-AT

Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)

Danio rerio, cytotoxic T cell whole-cell dataset (SEM-AT)

Wacker et al., 2015, Journal of Microscopy · SEM-AT

Danio rerio, adrenal medulla neutrophil whole-cell dataset (SEM-AT)

Wacker et al., 2015, Journal of Microscopy · SEM-AT

Saccharomyces cerevisiae whole-cell dataset (STEM)

Murata et al., 2014, Ultramicroscopy · STEM

Saccharomyces cerevisiae whole-cell dataset (SXT)

Carlson et al., 2013, Microscopy and Microanalysis · SXT

Curation note: A yeast cell

Plasmodium falciparum whole-cell dataset (SXT)

Hanssen et al., 2013, Cellular Microbiology · SXT

Curation note: 32

Plasmodium falciparum whole-cell dataset (ET (chemical))

Hanssen et al., 2013, Cellular Microbiology · ET (chemical)

Curation note: 17

Haematococcus pluvialis whole-cell dataset (ssTEM)

Wayama et al., 2013, PLoS ONE · ssTEM

Curation note: 1 coccoid cell, 1 cyst cell

Trypanosoma cruzi whole-cell dataset (ET (cryo))

Girard-Dias et al., 2012, Histochemistry and Cell Biology · ET (cryo)

Curation note: (M&M mentions "35 tomograms (appox. 25 from epimastigotes and 10 from amastigotes and epimastigotes)"

Chlamydomonas reinhartdii whole-cell dataset (SXT)

Hummel et al., 2012, PLoS One · SXT

Curation note: (6 wt; 8 mutant)

Plasmodium chaubadi whole-cell dataset (FIB-SEM)

Medeiros et al., 2012, PLoS One · FIB-SEM

Curation note: 10 quantified (Table 1); 1 or 2 whole cell images

Toxoplasma gondii whole-cell dataset (FIB-SEM)

Paredes-Santos et al., 2012, Journal of Structural Biology · FIB-SEM

Curation note: 2 reconstructions stated, 1 full 3D model visualized

Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)

Wei et al., 2012, Biotechniques · FIB-SEM

Curation note: 1 cell per resolution

Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)

Wei et al., 2012, Biotechniques · FIB-SEM

Curation note: 1 cell per resolution

Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)

Wei et al., 2012, Biotechniques · FIB-SEM

Curation note: 1 cell per resolution

Schizosaccharomyces pombe whole-cell dataset (HXT)

Zheng et al., 2012, Microscopy research and technique · HXT

T cell whole-cell dataset (FIB-SEM)

Murphy et al., 2011, Journal of Structural Biology · FIB-SEM

Trypanosoma cruzi whole-cell dataset (ssTEM)

Ramos et al., 2011, Cytometry A · ssTEM

Saccharomyces cerevisiae whole-cell dataset (SXT)

Uchida et al., 2011, Yeast · SXT

Saccharomyces cerevisiae whole-cell dataset (ssTEM)

Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · ssTEM

Curation note: (3 G1, 3 early G1)

Plasmodium falciparum whole-cell dataset (ET (cryo))

Hanssen et al., 2010, Methods in Cell Biology · ET (cryo)

Schizosaccharomyces pombe whole-cell dataset (X-ray diffraction)

Jiang et al., 2010, PNAS · X-ray diffraction

Crithidia deanei whole-cell dataset (FIB-SEM)

Motta et al., 2010, PLoS ONE · FIB-SEM

Curation note: "The description of events and timings in the C. deanei cell cycle were based on counts of 1000 cells."

MNT-1 (melanoma) whole-cell dataset (FIB-SEM (IA-SEM))

Heymann et al., 2009, Journal of Structural Biology · FIB-SEM (IA-SEM)

Plasmodium falciparum whole-cell dataset (STEM)

Hohmann-Marriott et al., 2009, Nature Methods · STEM

Candida albicans whole-cell dataset (SXT)

Uchida et al., 2009, Proc Natl Acad Sci USA · SXT

Curation note: split between yeast-like and germ tube (life cycle)

Trypanosoma cruzi whole-cell dataset (ssTEM)

Ferreira et al., 2008, Annals of the Brazilian Academy of Sciences · ssTEM

M. musculus, beta cell whole-cell dataset (ET (Cryo))

Noske et al., 2008, Journal of Structural Biology · ET (Cryo)

Schizosaccharomyces pombe whole-cell dataset (SXT)

Parkinson et al., 2008, Journal of Structural Biology · SXT

Curation note: 1 early cc, 1 pre-division, 1 mother & 1 daughter (attached)

Ostreococcus tauri whole-cell dataset (ET (cryo))

Henderson et al., 2007, PLoS One · ET (cryo)

Curation note: 10 (6 best cells used for quantitation) (52 imaged total); 23 dark-to-light transition; 29 light-to-dark transition;

Saccharomyces cerevisiae whole-cell dataset (ssTEM)

Perktold et al., 2007, FEMS Yeast Res · ssTEM

Curation note: at least one chemically fixed and one cryofixed

Saccharomyces cerevisiae whole-cell dataset (SXT)

Larabell et al., 2004, MBoC · SXT