Danio rerio, hair cells
Danio rerio, hair cells whole-cell dataset (SBF-SEM)
McQuate et al., 2023, eLife · SBF-SEM
ResSSBoundaryData: Partial
Key Organelles
mitochondriaflagella/cilia
Curation note: Some public data available.
Corpus
Search the Whole-Cell Imaging Corpus.
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Most Common Traits in This Slice
A quick snapshot of the active result set. Click a trait to narrow the corpus to that subset.
25 results filtered by organelle: mitochondria filtered by metric: other
In this slice of the corpus, 25 dataset records match. SEM-AT is the most common imaging family and mitochondria is the organelle that appears most often with other as the most common metric family. The most common captured organelle pair is mitochondria:nucleus.
Card Tag Legend
ResResolution values are reported.
SSSample size is reported.
BoundaryWhole-cell boundary is confirmed.
Public DataReusable public data is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
Danio rerio, supporting cells
Danio rerio, supporting cells whole-cell dataset (SBF-SEM)
McQuate et al., 2023, eLife · SBF-SEM
ResSSBoundaryData: Partial
Key Organelles
mitochondriaflagella/cilia
Curation note: Some public data available.
B lymphocyte
B lymphocyte whole-cell dataset (SXT)
Chen et al., 2022, Viruses · SXT
ResSSBoundary
Key Organelles
nucleusmitochondrialipid droplets
Curation note: true whole-cell reconstruction
INS-1E (R. norvegicus)
INS-1E (R. norvegicus) whole-cell dataset (SXT)
Loconte et al., 2022, Structure · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
Arabidopsis thaliana, mesophyll
Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM)
Midorikawa et al., 2022, PNAS Nexus · FESEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 3L, 3D
Brandtodinium nutricula
Brandtodinium nutricula whole-cell dataset (FIB-SEM)
Decelle et al., 2021, Environmental Microbiology · FIB-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 3 free-living, 4 symbiotic
GM12878 (B lymphocyte)
GM12878 (B lymphocyte) whole-cell dataset (SXT)
Loconte et al., 2021, Cell Reports Methods · SXT
ResSSBoundary
Key Organelles
ermitochondrialipid droplets
HEK293T
HEK293T whole-cell dataset (SXT)
Loconte et al., 2021, Cell Reports Methods · SXT
ResSSBoundary
Key Organelles
ermitochondrialipid droplets
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wu et al., 2020, Structure · FIB-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"
Arabidopsis thaliana, cortical root
Arabidopsis thaliana, cortical root whole-cell dataset (ET (cryo))
Cui et al., 2019, Nature Plants · ET (cryo)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Candida utilis
Candida utilis whole-cell dataset (SXT)
Liu et al., 2018, Journal of Microscopy · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 1 G1 and 1 budding
Danio rerio, neural progenitor cell
Danio rerio, neural progenitor cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 of each cell type (see below); 3 time points for zebrafish neural progenitor
Danio rerio, lens cell
Danio rerio, lens cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Danio rerio, skin cell
Danio rerio, skin cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Danio rerio, retinal neuroepithelial cell
Danio rerio, retinal neuroepithelial cell whole-cell dataset (Fluorescence (AO-LLSM))
Liu et al., 2018, Journal of Microscopy · Fluorescence (AO-LLSM)
ResSSBoundary
Key Organelles
nucleusermitochondria
Mm2T (Muntiacus muntjak)
Mm2T (Muntiacus muntjak) whole-cell dataset (ET)
Okumura et al., 2018, Micron · ET
SSBoundary
Key Organelles
mitochondrialipid droplets
Trypanosoma brucei
Trypanosoma brucei whole-cell dataset (SBF-SEM)
Gluenz et al., 2015, Methods in Cell Biology · SBF-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
Curation note: Fig 9. original data
Danio rerio, "long process" cell
Danio rerio, "long process" cell whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Danio rerio, "cogwheel" cell
Danio rerio, "cogwheel" cell whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Danio rerio, thymus
Danio rerio, thymus whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Danio rerio, cytotoxic T cell
Danio rerio, cytotoxic T cell whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusermitochondria
Danio rerio, adrenal medulla neutrophil
Danio rerio, adrenal medulla neutrophil whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (STEM)
Murata et al., 2014, Ultramicroscopy · STEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
T cell
T cell whole-cell dataset (FIB-SEM)
Murphy et al., 2011, Journal of Structural Biology · FIB-SEM
ResSSBoundary
Key Organelles
nucleusmitochondria
Plasmodium falciparum
Plasmodium falciparum whole-cell dataset (ET (cryo))
Hanssen et al., 2010, Methods in Cell Biology · ET (cryo)
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Compare Mode Preview
Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: nonespecies: Danio rerioorganelles: flagella/cilia, mitochondriaorganelle_pairs: flagella/cilia:mitochondriametric_families: count, dimensions, other, volume, volume_fractioncomparator_classes: developmental stagemodality_families: EM
Key Differences
modalities: SBF-SEMsample_size_buckets: 11-50, 51+public_data_statuses: partialboundary_confirmation: yes
Comparability Score:60 / 100
How It's Derived