Corpus
Search the Whole-Cell Imaging Corpus.
Filter the atlas, inspect records in card view, switch to table when you want a denser scan, and build a compare set from either view.
Use This Page
scanfilteropen recordscompare
Table view is best for scanning fast. Cards give more context. Compare selection now works in both views, and the drawer follows you until you clear it or open Compare.
Most Common Traits in This Slice
A quick snapshot of the active result set. Click a trait to narrow the corpus to that subset.
25 results filtered by organelle: mitochondria filtered by metric: other
In this slice of the corpus, 25 dataset records match. SEM-AT is the most common imaging family and mitochondria is the organelle that appears most often with other as the most common metric family. The most common captured organelle pair is mitochondria:nucleus.
| Compare | Dataset | Cell Type | Modality | Voxel Size (XY/Z nm) | Sample Size | Data Publicly Available |
|---|---|---|---|---|---|---|
| Danio rerio, hair cells whole-cell dataset (SBF-SEM) McQuate et al., 2023, eLife · PMID 36912880 | Danio rerio, hair cells Danio rerio | SBF-SEM | 5 x 45 nm voxel (XY/Z) | 134 | Partial | |
| Danio rerio, supporting cells whole-cell dataset (SBF-SEM) McQuate et al., 2023, eLife · PMID 36912880 | Danio rerio, supporting cells Danio rerio | SBF-SEM | 5 x 45 nm voxel (XY/Z) | 12 | Partial | |
| B lymphocyte whole-cell dataset (SXT) Chen et al., 2022, Viruses · PMID 36560654 | B lymphocyte B lymphocyte | SXT | 60 x 60 nm voxel (XY/Z) isotropic | 1 | Not Indexed | |
| INS-1E (R. norvegicus) whole-cell dataset (SXT) Loconte et al., 2022, Structure · PMID 35148829 | INS-1E (R. norvegicus) Rodent | SXT | 60 x 60 nm voxel (XY/Z) isotropic | 56 | Not Indexed | |
| Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM) Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 | Arabidopsis thaliana, mesophyll Arabidopsis thaliana | FESEM | 10 x 100 nm voxel (XY/Z) | 6 | Not Indexed | |
| Brandtodinium nutricula whole-cell dataset (FIB-SEM) Decelle et al., 2021, Environmental Microbiology · PMID 34499794 | Brandtodinium nutricula Brandtodinium nutricula | FIB-SEM | 8 x 8 nm voxel (XY/Z) isotropic | 7 | Not Indexed | |
| GM12878 (B lymphocyte) whole-cell dataset (SXT) Loconte et al., 2021, Cell Reports Methods · PMID 34729550 | GM12878 (B lymphocyte) Human (differentiated) | SXT | 50 x 50 nm voxel (XY/Z) isotropic | 17 | Not Indexed | |
| HEK293T whole-cell dataset (SXT) Loconte et al., 2021, Cell Reports Methods · PMID 34729550 | HEK293T Human (cancerous) | SXT | 50 x 50 nm voxel (XY/Z) isotropic | 3 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (FIB-SEM) Wu et al., 2020, Structure · PMID 32814034 | Saccharomyces cerevisiae Saccharomyces cerevisiae | FIB-SEM | 17.39 x 17.39 nm voxel (XY/Z) isotropic | 1 | Not Indexed | |
| Arabidopsis thaliana, cortical root whole-cell dataset (ET (cryo)) Cui et al., 2019, Nature Plants · PMID 30559414 | Arabidopsis thaliana, cortical root Arabidopsis thaliana | ET (cryo) | 4.3 x 300 nm voxel (XY/Z) | 1 | Not Indexed | |
| Candida utilis whole-cell dataset (SXT) Liu et al., 2018, Journal of Microscopy · PMID 28960304 | Candida utilis Candida utilis | SXT | 30 x 30 nm voxel (XY/Z) isotropic | 2 | Not Indexed | |
| Danio rerio, neural progenitor cell whole-cell dataset (Fluorescence (AO-LLSM)) Liu et al., 2018, Journal of Microscopy · PMID 28960304 | Danio rerio, neural progenitor cell Danio rerio | Fluorescence (AO-LLSM) | 97 x 200 nm voxel (XY/Z) | 1 | Not Indexed | |
| Danio rerio, lens cell whole-cell dataset (Fluorescence (AO-LLSM)) Liu et al., 2018, Journal of Microscopy · PMID 28960304 | Danio rerio, lens cell Danio rerio | Fluorescence (AO-LLSM) | 97 x 200 nm voxel (XY/Z) | 1 | Not Indexed | |
| Danio rerio, skin cell whole-cell dataset (Fluorescence (AO-LLSM)) Liu et al., 2018, Journal of Microscopy · PMID 28960304 | Danio rerio, skin cell Danio rerio | Fluorescence (AO-LLSM) | 97 x 200 nm voxel (XY/Z) | 1 | Not Indexed | |
| Danio rerio, retinal neuroepithelial cell whole-cell dataset (Fluorescence (AO-LLSM)) Liu et al., 2018, Journal of Microscopy · PMID 28960304 | Danio rerio, retinal neuroepithelial cell Danio rerio | Fluorescence (AO-LLSM) | 97 x 200 nm voxel (XY/Z) | 3 | Not Indexed | |
| Mm2T (Muntiacus muntjak) whole-cell dataset (ET) Okumura et al., 2018, Micron · PMID 29049927 | Mm2T (Muntiacus muntjak) Mammal | ET | Unknown | 1 | Not Indexed | |
| Trypanosoma brucei whole-cell dataset (SBF-SEM) Gluenz et al., 2015, Methods in Cell Biology · PMID 25837406 | Trypanosoma brucei Trypanosoma brucei | SBF-SEM | 6.1 x 100 nm voxel (XY/Z) | 1 | Not Indexed | |
| Danio rerio, "long process" cell whole-cell dataset (SEM-AT) Wacker et al., 2015, Journal of Microscopy · PMID 25611576 | Danio rerio, "long process" cell Danio rerio | SEM-AT | 5 x 70 nm voxel (XY/Z) | 1 | Not Indexed | |
| Danio rerio, "cogwheel" cell whole-cell dataset (SEM-AT) Wacker et al., 2015, Journal of Microscopy · PMID 25611576 | Danio rerio, "cogwheel" cell Danio rerio | SEM-AT | 5 x 70 nm voxel (XY/Z) | 1 | Not Indexed | |
| Danio rerio, thymus whole-cell dataset (SEM-AT) Wacker et al., 2015, Journal of Microscopy · PMID 25611576 | Danio rerio, thymus Danio rerio | SEM-AT | 5 x 70 nm voxel (XY/Z) | 1 | Not Indexed | |
| Danio rerio, cytotoxic T cell whole-cell dataset (SEM-AT) Wacker et al., 2015, Journal of Microscopy · PMID 25611576 | Danio rerio, cytotoxic T cell Danio rerio | SEM-AT | 5 x 70 nm voxel (XY/Z) | 1 | Not Indexed | |
| Danio rerio, adrenal medulla neutrophil whole-cell dataset (SEM-AT) Wacker et al., 2015, Journal of Microscopy · PMID 25611576 | Danio rerio, adrenal medulla neutrophil Danio rerio | SEM-AT | 5 x 70 nm voxel (XY/Z) | 1 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (STEM) Murata et al., 2014, Ultramicroscopy · PMID 24935612 | Saccharomyces cerevisiae Saccharomyces cerevisiae | STEM | 5 x 25 nm voxel (XY/Z) | 1 | Not Indexed | |
| T cell whole-cell dataset (FIB-SEM) Murphy et al., 2011, Journal of Structural Biology · PMID 21907806 | T cell T cell | FIB-SEM | 21 x 21 nm voxel (XY/Z) isotropic | 1 | Not Indexed | |
| Plasmodium falciparum whole-cell dataset (ET (cryo)) Hanssen et al., 2010, Methods in Cell Biology · PMID 20869520 | Plasmodium falciparum Plasmodium falciparum | ET (cryo) | 1.63 x 300 nm voxel (XY/Z) | 1 | Not Indexed |
Compare Mode Preview
Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: nonespecies: Danio rerioorganelles: flagella/cilia, mitochondriaorganelle_pairs: flagella/cilia:mitochondriametric_families: count, dimensions, other, volume, volume_fractioncomparator_classes: developmental stagemodality_families: EM
Key Differences
modalities: SBF-SEMsample_size_buckets: 11-50, 51+public_data_statuses: partialboundary_confirmation: yes
Comparability Score:60 / 100
How It's Derived