Saccharomyces cerevisiae whole-cell dataset (Optical tomography (phase contrast))
Bianco et al., 2023, Small Methods · PMID 37670547 · Optical tomography (phase contrast)
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In this slice of the corpus, 27 dataset records match. SEM-AT is the most common imaging family and nucleus is the organelle that appears most often with other as the most common metric family. The most common captured organelle pair is mitochondria:nucleus.
Bianco et al., 2023, Small Methods · PMID 37670547 · Optical tomography (phase contrast)
Cho et al., 2023, Analytical Chemistry · PMID 37523497 · Optical tomography (diffraction)
Curation note: (nucleus + autophagosome, Fig 5C, originally thought we'd include Fig 7 but cells appear to be cut off)
Koutsogiannis et al., 2023, Frontiers in Cellular and Infection Microbiology · PMID 37600951 · Optical tomography (diffraction)
Curation note: 1 WT, 2 cerS1 mutant
Chen et al., 2022, Viruses · PMID 36560654 · SXT
Curation note: true whole-cell reconstruction
Loconte et al., 2022, Structure · PMID 35148829 · SXT
Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 · FESEM
Curation note: 3L, 3D
Decelle et al., 2021, Environmental Microbiology · PMID 34499794 · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Wu et al., 2020, Structure · PMID 32814034 · FIB-SEM
Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"
Cui et al., 2019, Nature Plants · PMID 30559414 · ET (cryo)
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · SXT
Curation note: 1 G1 and 1 budding
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Curation note: 1 of each cell type (see below); 3 time points for zebrafish neural progenitor
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Gluenz et al., 2015, Methods in Cell Biology · PMID 25837406 · SBF-SEM
Curation note: Fig 9. original data
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Murata et al., 2014, Ultramicroscopy · PMID 24935612 · STEM
Murphy et al., 2011, Journal of Structural Biology · PMID 21907806 · FIB-SEM
Hanssen et al., 2010, Methods in Cell Biology · PMID 20869520 · ET (cryo)
Motta et al., 2010, PLoS ONE · PMID 20865129 · FIB-SEM
Curation note: "The description of events and timings in the C. deanei cell cycle were based on counts of 1000 cells."
Hohmann-Marriott et al., 2009, Nature Methods · PMID 19718033 · STEM
Ferreira et al., 2008, Annals of the Brazilian Academy of Sciences · PMID 18345384 · ssTEM
Larabell et al., 2004, MBoC · PMID 14699066 · SXT
Moderate comparability; useful for targeted comparison with technical caveats.