Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (Optical tomography (phase contrast))
Bianco et al., 2023, Small Methods · Optical tomography (phase contrast)
SSBoundary
Key Organelles
nucleusvacuole/lysosome
Corpus
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15 results filtered by organelle: vacuole/lysosome filtered by metric: other filtered by pair: nucleus:vacuole/lysosome
In this slice of the corpus, 15 dataset records match. SEM-AT is the most common imaging family and nucleus is the organelle that appears most often with other as the most common metric family. The most common captured organelle pair is nucleus:vacuole/lysosome.
Card Tag Legend
ResResolution values are reported.
SSSample size is reported.
BoundaryWhole-cell boundary is confirmed.
Public DataReusable public data is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
Arabidopsis thaliana, mesophyll
Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM)
Midorikawa et al., 2022, PNAS Nexus · FESEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 3L, 3D
Brandtodinium nutricula
Brandtodinium nutricula whole-cell dataset (FIB-SEM)
Decelle et al., 2021, Environmental Microbiology · FIB-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 3 free-living, 4 symbiotic
Plasmodium falciparum
Plasmodium falciparum whole-cell dataset (FIB-SEM)
Rudlaff et al., 2020, PLOS Pathogens · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusvacuole/lysosomecentrosome/basal body
Curation note: Some public data available.
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wu et al., 2020, Structure · FIB-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"
Arabidopsis thaliana, cortical root
Arabidopsis thaliana, cortical root whole-cell dataset (ET (cryo))
Cui et al., 2019, Nature Plants · ET (cryo)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Candida utilis
Candida utilis whole-cell dataset (SXT)
Liu et al., 2018, Journal of Microscopy · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 1 G1 and 1 budding
Danio rerio, "long process" cell
Danio rerio, "long process" cell whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Danio rerio, "cogwheel" cell
Danio rerio, "cogwheel" cell whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Danio rerio, thymus
Danio rerio, thymus whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Danio rerio, cytotoxic T cell
Danio rerio, cytotoxic T cell whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusermitochondria
Danio rerio, adrenal medulla neutrophil
Danio rerio, adrenal medulla neutrophil whole-cell dataset (SEM-AT)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (STEM)
Murata et al., 2014, Ultramicroscopy · STEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Plasmodium falciparum
Plasmodium falciparum whole-cell dataset (ET (cryo))
Hanssen et al., 2010, Methods in Cell Biology · ET (cryo)
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Plasmodium falciparum
Plasmodium falciparum whole-cell dataset (STEM)
Hohmann-Marriott et al., 2009, Nature Methods · STEM
ResSSBoundary
Key Organelles
nucleusvacuole/lysosomelipid droplets
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Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: Saccharomyces cerevisiaespecies: Saccharomyces cerevisiaeorganelles: nucleus, vacuole/lysosomeorganelle_pairs: nucleus:vacuole/lysosomemetric_families: othercomparator_classes: nonemodality_families: none
Key Differences
modalities: FIB-SEM, Optical tomography (phase contrast)sample_size_buckets: 1, 2-10public_data_statuses: noneboundary_confirmation: yes
Comparability Score:53 / 100
How It's Derived