M. musculus, alpha cell
M. musculus, alpha cell whole-cell dataset (SXT)
Deshmukh et al., 2024, Cells · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
Curation note: 8 alpha, 7 beta
Corpus
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Most Common Traits in This Slice
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16 results filtered by organelle: vesicles filtered by metric: volume
In this slice of the corpus, 16 dataset records match. SXT is the most common imaging family and mitochondria is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is mitochondria:vesicles.
Card Tag Legend
ResResolution values are reported.
SSSample size is reported.
BoundaryWhole-cell boundary is confirmed.
Public DataReusable public data is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
M. musculus, beta cell
M. musculus, beta cell whole-cell dataset (SXT)
Deshmukh et al., 2024, Cells · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
H446 (lung cancer)
H446 (lung cancer) whole-cell dataset (SBF-SEM)
Jadav et al., 2023, Journal of Structural Biology · SBF-SEM
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
INS-1E (R. norvegicus)
INS-1E (R. norvegicus) whole-cell dataset (SXT)
Li et al., 2022, PLoS One. · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
Curation note: 40 tomograms from SXT extended to 132. unsure if those original 40 are included in the 132. 3 for analysis
INS-1E (R. norvegicus)
INS-1E (R. norvegicus) whole-cell dataset (SXT)
Loconte et al., 2022, Structure · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
GM12878 (B lymphocyte)
GM12878 (B lymphocyte) whole-cell dataset (SXT)
Loconte et al., 2021, Cell Reports Methods · SXT
ResSSBoundary
Key Organelles
ermitochondrialipid droplets
HEK293T
HEK293T whole-cell dataset (SXT)
Loconte et al., 2021, Cell Reports Methods · SXT
ResSSBoundary
Key Organelles
ermitochondrialipid droplets
Pelagomonas
Pelagomonas whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, Nature Communications · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriachloroplast/plastid
Curation note: Some public data available.
INS-1E (R. norvegicus)
INS-1E (R. norvegicus) whole-cell dataset (SXT)
White et al., 2020, Science Advances · SXT
ResSSBoundary
Key Organelles
nucleusmitochondrialipid droplets
Curation note: 8 x 5 conditions
Salpingoeca rosetta
Salpingoeca rosetta whole-cell dataset (ssTEM)
Laundon et al., 2019, PLOS Biology · ssTEM
SSBoundaryData: Partial
Key Organelles
nucleusermitochondria
Curation note: Some public data available. 3 colonial, 3 single
Plasmodium falciparum
Plasmodium falciparum whole-cell dataset (SBF-SEM)
Sakaguchi et al., 2016, Journal of Structural Biology · SBF-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (FIB-SEM)
Wei et al., 2012, Biotechniques · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 1 cell per resolution
Trypanosoma cruzi
Trypanosoma cruzi whole-cell dataset (ssTEM)
Ramos et al., 2011, Cytometry A · ssTEM
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (ssTEM)
Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · ssTEM
ResSSBoundary
Key Organelles
ermitochondriavacuole/lysosome
Curation note: (3 G1, 3 early G1)
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Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: nonespecies: M. musculusorganelles: mitochondria, nucleus, vesiclesorganelle_pairs: mitochondria:nucleus, mitochondria:vesicles, nucleus:vesiclesmetric_families: count, density, dimensions, surface_area, volume, volume_fractioncomparator_classes: cell typemodality_families: X-ray
Key Differences
modalities: SXTsample_size_buckets: 2-10public_data_statuses: noneboundary_confirmation: yes
Comparability Score:70 / 100
How It's Derived