Arabidopsis thaliana, mesophyll
Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM)
Midorikawa et al., 2022, PNAS Nexus · FESEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 3L, 3D
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7 results filtered by organelle: peroxisome filtered by metric: volume_fraction
In this slice of the corpus, 7 dataset records match. FIB-SEM is the most common imaging family and mitochondria is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is mitochondria:peroxisome.
Card Tag Legend
ResResolution values are reported.
SSSample size is reported.
BoundaryWhole-cell boundary is confirmed.
Public DataReusable public data is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
Nicotiana tabacum
Nicotiana tabacum whole-cell dataset (FIB-SEM)
Zechmann et al., 2022, Planta · FIB-SEM
SSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Nicotiana tabacum
Nicotiana tabacum whole-cell dataset (ssTEM)
Zechmann et al., 2022, Planta · ssTEM
SSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Cucurbita pepo
Cucurbita pepo whole-cell dataset (FIB-SEM)
Zechmann et al., 2022, Planta · FIB-SEM
SSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Cucurbita pepo
Cucurbita pepo whole-cell dataset (ssTEM)
Zechmann et al., 2022, Planta · ssTEM
SSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
COS-7 (Cercopithecus aethiops)
COS-7 (Cercopithecus aethiops) whole-cell dataset (Fluorescence (LLS))
Valm et al., 2017, Nature · Fluorescence (LLS)
ResSSBoundary
Key Organelles
ermitochondriavacuole/lysosome
Ostreococcus tauri
Ostreococcus tauri whole-cell dataset (ET (cryo))
Henderson et al., 2007, PLoS One · ET (cryo)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 10 (6 best cells used for quantitation) (52 imaged total); 23 dark-to-light transition; 29 light-to-dark transition;
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High biological overlap with enough shared structure to justify direct comparison.
Shared Fields
cell_types: Nicotiana tabacumspecies: Nicotiana tabacumorganelles: chloroplast/plastid, mitochondria, nucleus, peroxisome, vacuole/lysosomeorganelle_pairs: chloroplast/plastid:mitochondria, chloroplast/plastid:nucleus, chloroplast/plastid:peroxisome, chloroplast/plastid:vacuole/lysosome, mitochondria:nucleus, mitochondria:peroxisome, mitochondria:vacuole/lysosome, nucleus:peroxisome, nucleus:vacuole/lysosome, peroxisome:vacuole/lysosomemetric_families: count, dimensions, surface_area, volume, volume_fractioncomparator_classes: cell typemodality_families: EM
Key Differences
modalities: FIB-SEM, ssTEMsample_size_buckets: 1public_data_statuses: noneboundary_confirmation: yes
Comparability Score:100 / 100
How It's Derived