Saccharomyces cerevisiae whole-cell dataset (SXT)
Egebjerg et al., 2024, Autophagy · SXT
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In this slice of the corpus, 45 dataset records match. SXT is the most common imaging family and vacuole/lysosome is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is nucleus:vacuole/lysosome.
Egebjerg et al., 2024, Autophagy · SXT
Xu et al., 2024, ACS Nano · SXT
Curation note: 6 ctrl + 6 AgNP-treated
Bianco et al., 2023, Small Methods · Optical tomography (phase contrast)
Dang et al., 2023, ACS Nano · SXT
Feng et al., 2023, Protoplasma · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Mirasole et al., 2023, Scientific Reports · Fluorescence
Midorikawa et al., 2022, PNAS Nexus · FESEM
Curation note: 3L, 3D
Zechmann et al., 2022, Planta · FIB-SEM
Zechmann et al., 2022, Planta · ssTEM
Zechmann et al., 2022, Planta · FIB-SEM
Zechmann et al., 2022, Planta · ssTEM
Decelle et al., 2021, Environmental Microbiology · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Umemura et al., 2020, MethodsX · Optical tomography (diffraction)
Wu et al., 2020, Structure · FIB-SEM
Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"
Cui et al., 2019, Nature Plants · ET (cryo)
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Liu et al., 2018, Journal of Microscopy · SXT
Curation note: 1 G1 and 1 budding
Yao et al., 2018, IUCrJ · STXM
Fogelqvist et al., 2017, Scientific Reports · SXT
Valm et al., 2017, Nature · Fluorescence (LLS)
Ota et al., 2016, Biotechnology for Biofuels · ssTEM
Curation note: 1 per condition
Diaz et al., 2015, Journal of Structural Biology · HXT (ptychography)
Niclis et al., 2015, J Royal Society Interface · SXT
Niclis et al., 2015, J Royal Society Interface · SXT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Murata et al., 2014, Ultramicroscopy · STEM
Carlson et al., 2013, Microscopy and Microanalysis · SXT
Curation note: A yeast cell
Girard-Dias et al., 2012, Histochemistry and Cell Biology · ET (cryo)
Curation note: (M&M mentions "35 tomograms (appox. 25 from epimastigotes and 10 from amastigotes and epimastigotes)"
Hummel et al., 2012, PLoS One · SXT
Curation note: (6 wt; 8 mutant)
Medeiros et al., 2012, PLoS One · FIB-SEM
Curation note: 10 quantified (Table 1); 1 or 2 whole cell images
Wei et al., 2012, Biotechniques · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · FIB-SEM
Curation note: 1 cell per resolution
Zheng et al., 2012, Microscopy research and technique · HXT
Uchida et al., 2011, Yeast · SXT
Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · ssTEM
Curation note: (3 G1, 3 early G1)
Hanssen et al., 2010, Methods in Cell Biology · ET (cryo)
Jiang et al., 2010, PNAS · X-ray diffraction
Hohmann-Marriott et al., 2009, Nature Methods · STEM
Uchida et al., 2009, Proc Natl Acad Sci USA · SXT
Curation note: split between yeast-like and germ tube (life cycle)
Parkinson et al., 2008, Journal of Structural Biology · SXT
Curation note: 1 early cc, 1 pre-division, 1 mother & 1 daughter (attached)
Perktold et al., 2007, FEMS Yeast Res · ssTEM
Curation note: at least one chemically fixed and one cryofixed
Moderate comparability; useful for targeted comparison with technical caveats.