Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (SXT)
Egebjerg et al., 2024, Autophagy · SXT
ResSSBoundary
Key Organelles
vacuole/lysosomelipid droplets
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10 results filtered by organelle: vacuole/lysosome filtered by metric: distance
In this slice of the corpus, 10 dataset records match. ssTEM is the most common imaging family and vacuole/lysosome is the organelle that appears most often with distance as the most common metric family. The most common captured organelle pair is mitochondria:vacuole/lysosome.
Card Tag Legend
ResResolution values are reported.
SSSample size is reported.
BoundaryWhole-cell boundary is confirmed.
Public DataReusable public data is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (Optical tomography (phase contrast))
Bianco et al., 2023, Small Methods · Optical tomography (phase contrast)
SSBoundary
Key Organelles
nucleusvacuole/lysosome
Chlorella pyrenoidosa
Chlorella pyrenoidosa whole-cell dataset (FIB-SEM)
Feng et al., 2023, Protoplasma · FIB-SEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Arabidopsis thaliana, mesophyll
Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM)
Midorikawa et al., 2022, PNAS Nexus · FESEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 3L, 3D
Phaeocystis cordata
Phaeocystis cordata whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, PNAS · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))
Salpingoeca rosetta
Salpingoeca rosetta whole-cell dataset (ssTEM)
Laundon et al., 2019, PLOS Biology · ssTEM
SSBoundaryData: Partial
Key Organelles
nucleusermitochondria
Curation note: Some public data available. 3 colonial, 3 single
Oscarella carmela, choanocytes
Oscarella carmela, choanocytes whole-cell dataset (ssTEM)
Laundon et al., 2019, PLOS Biology · ssTEM
SSBoundaryData: Partial
Key Organelles
nucleusermitochondria
Curation note: Some public data available.
COS-7 (Cercopithecus aethiops)
COS-7 (Cercopithecus aethiops) whole-cell dataset (Fluorescence (LLS))
Valm et al., 2017, Nature · Fluorescence (LLS)
ResSSBoundary
Key Organelles
ermitochondriavacuole/lysosome
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (ssTEM)
Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · ssTEM
ResSSBoundary
Key Organelles
ermitochondriavacuole/lysosome
Curation note: (3 G1, 3 early G1)
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (ssTEM)
Perktold et al., 2007, FEMS Yeast Res · ssTEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: at least one chemically fixed and one cryofixed
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Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: Saccharomyces cerevisiaespecies: Saccharomyces cerevisiaeorganelles: vacuole/lysosomeorganelle_pairs: nonemetric_families: contacts, distance, shape, volumecomparator_classes: nonemodality_families: none
Key Differences
modalities: Optical tomography (phase contrast), SXTsample_size_buckets: 2-10, 51+public_data_statuses: noneboundary_confirmation: yes
Comparability Score:57 / 100
How It's Derived