Corpus
Search the Whole-Cell Imaging Corpus.
Filter the atlas, inspect records in card view, switch to table when you want a denser scan, and build a compare set from either view.
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Most Common Traits in This Slice
A quick snapshot of the active result set. Click a trait to narrow the corpus to that subset.
11 results filtered by organelle: vacuole/lysosome filtered by metric: shape
In this slice of the corpus, 11 dataset records match. FIB-SEM is the most common imaging family and vacuole/lysosome is the organelle that appears most often with shape as the most common metric family. The most common captured organelle pair is nucleus:vacuole/lysosome.
| Compare | Dataset | Cell Type | Modality | Voxel Size (XY/Z nm) | Sample Size | Data Publicly Available |
|---|---|---|---|---|---|---|
| Saccharomyces cerevisiae whole-cell dataset (SXT) Egebjerg et al., 2024, Autophagy · PMID 37908116 | Saccharomyces cerevisiae Saccharomyces cerevisiae | SXT | 19.9 x 19.9 nm voxel (XY/Z) isotropic | 72 | Not Indexed | |
| Saccharomyces cerevisiae whole-cell dataset (Optical tomography (phase contrast)) Bianco et al., 2023, Small Methods · PMID 37670547 | Saccharomyces cerevisiae Saccharomyces cerevisiae | Optical tomography (phase contrast) | 0.5 nm XY voxel | 4 | Not Indexed | |
| Candida utilis whole-cell dataset (SXT) Dang et al., 2023, ACS Nano · PMID 37156644 | Candida utilis Candida utilis | SXT | 30 x 30 nm voxel (XY/Z) isotropic | 40 | Not Indexed | |
| Chlorella pyrenoidosa whole-cell dataset (FIB-SEM) Feng et al., 2023, Protoplasma · PMID 36416933 | Chlorella pyrenoidosa Chlorella pyrenoidosa | FIB-SEM | 2.44 x 8 nm voxel (XY/Z) | 9 | Not Indexed | |
| Arabidopsis thaliana, guard cell whole-cell dataset (Fluorescence) Mirasole et al., 2023, Scientific Reports · PMID 37169939 | Arabidopsis thaliana, guard cell Arabidopsis thaliana | Fluorescence | 120 x 285 nm voxel (XY/Z) | 10 | Not Indexed | |
| Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM) Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 | Arabidopsis thaliana, mesophyll Arabidopsis thaliana | FESEM | 10 x 100 nm voxel (XY/Z) | 6 | Not Indexed | |
| Phaeocystis cordata whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, PNAS · PMID 34215695 | Phaeocystis cordata Phaeocystis cordata | FIB-SEM | 7.5 x 7.5 nm voxel (XY/Z) isotropic | 27 | Partial | |
| Cylindrotheca sp. whole-cell dataset (Optical tomography (diffraction)) Umemura et al., 2020, MethodsX · PMID 32382522 | Cylindrotheca sp. Cylindrotheca sp. | Optical tomography (diffraction) | 100 x 360 nm voxel (XY/Z) | 1 | Not Indexed | |
| Salpingoeca rosetta whole-cell dataset (ssTEM) Laundon et al., 2019, PLOS Biology · PMID 30978201 | Salpingoeca rosetta Salpingoeca rosetta | ssTEM | Unknown | 6 | Partial | |
| Oscarella carmela, choanocytes whole-cell dataset (ssTEM) Laundon et al., 2019, PLOS Biology · PMID 30978201 | Oscarella carmela, choanocytes Oscarella carmela | ssTEM | Unknown | 5 | Partial | |
| M. musculus, macrophage whole-cell dataset (STXM) Yao et al., 2018, IUCrJ · PMID 29765603 | M. musculus, macrophage M. musculus | STXM | 77.5 x 50 nm voxel (XY/Z) | 1 | Not Indexed |
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Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: Saccharomyces cerevisiaespecies: Saccharomyces cerevisiaeorganelles: vacuole/lysosomeorganelle_pairs: nonemetric_families: contacts, distance, shape, volumecomparator_classes: nonemodality_families: none
Key Differences
modalities: Optical tomography (phase contrast), SXTsample_size_buckets: 2-10, 51+public_data_statuses: noneboundary_confirmation: yes
Comparability Score:57 / 100
How It's Derived