Leishmania mexicana whole-cell dataset (SBF-SEM)
Hair et al., 2024, PLOS Pathogens · PMID 38416776 · SBF-SEM
Curation note: Some public data available. 41 in vitro, 10 sand fly-derived
Filter the atlas, inspect records in card view, switch to table when you want a denser scan, and build a compare set from either view.
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A quick reading of the active result set. Click a trait to narrow the corpus to that subset; this is a frequency snapshot, not a quality ranking.
In this slice of the corpus, 16 dataset records match. FIB-SEM is the most common imaging family and nucleus is the organelle that appears most often with surface_area as the most common metric family. The most common captured organelle pair is nucleus:vacuole/lysosome.
Hair et al., 2024, PLOS Pathogens · PMID 38416776 · SBF-SEM
Curation note: Some public data available. 41 in vitro, 10 sand fly-derived
Bianco et al., 2023, Small Methods · PMID 37670547 · Optical tomography (phase contrast)
Feng et al., 2023, Protoplasma · PMID 36416933 · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 · FESEM
Curation note: 3L, 3D
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
Decelle et al., 2021, Environmental Microbiology · PMID 34499794 · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Uwizeye et al., 2021, PNAS · PMID 34215695 · FIB-SEM
Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))
Sakaguchi et al., 2016, Journal of Structural Biology · PMID 26772147 · SBF-SEM
Curation note: Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles
Niclis et al., 2015, J Royal Society Interface · PMID 26063819 · SXT
Niclis et al., 2015, J Royal Society Interface · PMID 26063819 · SXT
Medeiros et al., 2012, PLoS One · PMID 22432024 · FIB-SEM
Curation note: 10 quantified (Table 1); 1 or 2 whole cell images
Uchida et al., 2011, Yeast · PMID 21360734 · SXT
Perktold et al., 2007, FEMS Yeast Res · PMID 17419771 · ssTEM
Curation note: at least one chemically fixed and one cryofixed
Moderate comparability; useful for targeted comparison with technical caveats.