Arabidopsis thaliana, mesophyll
Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM)
Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 · FESEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 3L, 3D
Corpus
Search the Whole-Cell Imaging Corpus.
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Commonality Snapshot
A quick reading of the active result set. Click a trait to narrow the corpus to that subset; this is a frequency snapshot, not a quality ranking.
6 results filtered by organelle: chloroplast/plastid filtered by pair: chloroplast/plastid:peroxisome
In this slice of the corpus, 6 dataset records match. FIB-SEM is the most common imaging family and chloroplast/plastid is the organelle that appears most often with surface_area as the most common metric family. The most common captured organelle pair is chloroplast/plastid:mitochondria.
Card Tag Legend
ResThree-dimensional voxel size is reported.
SSSample size is reported.
BoundaryWhole-cell boundary confirmation is present.
Public DataA reusable public-data locator is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
Nicotiana tabacum
Nicotiana tabacum whole-cell dataset (FIB-SEM)
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
SSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Nicotiana tabacum
Nicotiana tabacum whole-cell dataset (ssTEM)
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
SSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Cucurbita pepo
Cucurbita pepo whole-cell dataset (FIB-SEM)
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
SSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Cucurbita pepo
Cucurbita pepo whole-cell dataset (ssTEM)
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
SSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Ostreococcus tauri
Ostreococcus tauri whole-cell dataset (ET (cryo))
Henderson et al., 2007, PLoS One · PMID 17710148 · ET (cryo)
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: 10 (6 best cells used for quantitation) (52 imaged total); 23 dark-to-light transition; 29 light-to-dark transition;
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Comparison Summary
High biological overlap with enough shared structure to justify direct comparison.
This selection includes multiple dataset records from the same paper: Zechmann 2022. Treat the result as an within-study alignment check, not independent cross-study validation.
Shared Fields
Cell Type: Nicotiana tabacumSpecies: Nicotiana tabacumOrganelles: chloroplast/plastid, mitochondria, nucleus, peroxisome, vacuole/lysosomeDerived Organelle Pairs: chloroplast/plastid:mitochondria, chloroplast/plastid:nucleus, chloroplast/plastid:peroxisome, chloroplast/plastid:vacuole/lysosome, mitochondria:nucleus, mitochondria:peroxisome, mitochondria:vacuole/lysosome, nucleus:peroxisome, nucleus:vacuole/lysosome, peroxisome:vacuole/lysosomeMetric Families: count, dimensions, surface_area, volume, volume_fractionComparator / Condition: cell typeModality Family: EM
Key Differences
Modality: FIB-SEM, ssTEMSample Size Band: 1Public Data Status: noneBoundary Confirmation: yes
Comparability Score:100 / 100
How It's Derived