Leishmania mexicana whole-cell dataset (SBF-SEM)
Hair et al., 2024, PLOS Pathogens · PMID 38416776 · SBF-SEM
Curation note: Some public data available. 41 in vitro, 10 sand fly-derived
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In this slice of the corpus, 40 dataset records match. FIB-SEM is the most common imaging family and mitochondria is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is mitochondria:vacuole/lysosome.
Hair et al., 2024, PLOS Pathogens · PMID 38416776 · SBF-SEM
Curation note: Some public data available. 41 in vitro, 10 sand fly-derived
Antao et al., 2023, Nature Communications · PMID 37996434 · SBF-SEM
Curation note: Some public data available. 21+ E.i. ("A minimum of 7 parasites were segmented completely per condition" [sporonts, sporoblasts, spores])
Dang et al., 2023, ACS Nano · PMID 37156644 · SXT
Feng et al., 2023, Protoplasma · PMID 36416933 · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 · FESEM
Curation note: 3L, 3D
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
Decelle et al., 2021, Environmental Microbiology · PMID 34499794 · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Uwizeye et al., 2021, PNAS · PMID 34215695 · FIB-SEM
Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))
Wu et al., 2020, Structure · PMID 32814034 · FIB-SEM
Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"
Cui et al., 2019, Nature Plants · PMID 30559414 · ET (cryo)
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Laundon et al., 2019, PLOS Biology · PMID 30978201 · ssTEM
Curation note: Some public data available. 3 colonial, 3 single
Laundon et al., 2019, PLOS Biology · PMID 30978201 · ssTEM
Curation note: Some public data available.
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · SXT
Curation note: 1 G1 and 1 budding
Valm et al., 2017, Nature · PMID 28538724 · Fluorescence (LLS)
Ota et al., 2016, Biotechnology for Biofuels · PMID 26811738 · ssTEM
Curation note: 1 per condition
Sakaguchi et al., 2016, Journal of Structural Biology · PMID 26772147 · SBF-SEM
Curation note: Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles
Niclis et al., 2015, J Royal Society Interface · PMID 26063819 · SXT
Niclis et al., 2015, J Royal Society Interface · PMID 26063819 · SXT
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Murata et al., 2014, Ultramicroscopy · PMID 24935612 · STEM
Carlson et al., 2013, Microscopy and Microanalysis · PMID 23332214 · SXT
Curation note: A yeast cell
Hummel et al., 2012, PLoS One · PMID 23300909 · SXT
Curation note: (6 wt; 8 mutant)
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Zheng et al., 2012, Microscopy research and technique · PMID 22505187 · HXT
Uchida et al., 2011, Yeast · PMID 21360734 · SXT
Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · PMID 21908548 · ssTEM
Curation note: (3 G1, 3 early G1)
Hanssen et al., 2010, Methods in Cell Biology · PMID 20869520 · ET (cryo)
Jiang et al., 2010, PNAS · PMID 20534442 · X-ray diffraction
Uchida et al., 2009, Proc Natl Acad Sci USA · PMID 19880740 · SXT
Curation note: split between yeast-like and germ tube (life cycle)
Parkinson et al., 2008, Journal of Structural Biology · PMID 18387313 · SXT
Curation note: 1 early cc, 1 pre-division, 1 mother & 1 daughter (attached)
Perktold et al., 2007, FEMS Yeast Res · PMID 17419771 · ssTEM
Curation note: at least one chemically fixed and one cryofixed
High biological overlap with enough shared structure to justify direct comparison.