M. musculus, alpha cell whole-cell dataset (SXT)
Deshmukh et al., 2024, Cells · PMID 38786091 · SXT
Curation note: 8 alpha, 7 beta
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In this slice of the corpus, 74 dataset records match. SXT is the most common imaging family and mitochondria is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is mitochondria:nucleus.
Deshmukh et al., 2024, Cells · PMID 38786091 · SXT
Curation note: 8 alpha, 7 beta
Deshmukh et al., 2024, Cells · PMID 38786091 · SXT
Kichuk et al., 2024, Cell Reports Methods · PMID 38232737 · Fluorescence
Dang et al., 2023, ACS Nano · PMID 37156644 · SXT
Feng et al., 2023, Protoplasma · PMID 36416933 · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Jadav et al., 2023, Journal of Structural Biology · PMID 37805154 · SBF-SEM
Matharu et al., 2023, Platelets · PMID 37933490 · FIB-SEM
Curation note: 63 including mito (606 total cell+AGl, 300 Ctrl, 306 COVID)
Tashyreva et al., 2023, mBio · PMID 37737610 · SBF-SEM
Wang et al., 2023, iScience · PMID 37519903 · Fluorescence
Wang et al., 2023, iScience · PMID 37519903 · Fluorescence
Curation note: 10 cells per 4 cell lines per 2 culture conditions
Wang et al., 2023, iScience · PMID 37519903 · Fluorescence
Wang et al., 2023, iScience · PMID 37519903 · Fluorescence
Burrell et al., 2022, PLoS Pathogens · PMID 35816515 · SBF-SEM
Chen et al., 2022, Viruses · PMID 36560654 · SXT
Curation note: true whole-cell reconstruction
Li et al., 2022, PLoS One. · PMID 35324950 · SXT
Curation note: 40 tomograms from SXT extended to 132. unsure if those original 40 are included in the 132. 3 for analysis
Loconte et al., 2022, Structure · PMID 35148829 · SXT
Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 · FESEM
Curation note: 3L, 3D
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
Decelle et al., 2021, Environmental Microbiology · PMID 34499794 · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Loconte et al., 2021, Cell Reports Methods · PMID 34729550 · SXT
Loconte et al., 2021, Cell Reports Methods · PMID 34729550 · SXT
Pokrovskaya et al., 2021, Platelets · PMID 32815431 · SBF-SEM
Conesa et al., 2020, mSphere · PMID 33055261 · SXT
Curation note: at least 40 parasites in 19 RBCs, counted from Fig 4, couldn’t find SS stated in text;
Hoffman et al., 2020, Science · PMID 31949053 · FIB-SEM
White et al., 2020, Science Advances · PMID 33298443 · SXT
Curation note: 8 x 5 conditions
Wu et al., 2020, Structure · PMID 32814034 · FIB-SEM
Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"
Cui et al., 2019, Nature Plants · PMID 30559414 · ET (cryo)
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Pokrovskaya et al., 2019, Res Pract Thromb Haemost · PMID 31989087 · SBF-SEM
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · SXT
Curation note: 1 G1 and 1 budding
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Curation note: 1 of each cell type (see below); 3 time points for zebrafish neural progenitor
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Okumura et al., 2018, Micron · PMID 29049927 · ET
Cooper et al., 2017, Parasites & Vectors · PMID 28499405 · FIB-SEM
Curation note: 2 full reconstructions; quants from 25 cells, only kinetoplasts segmented
Hughes et al., 2017, Journal of Cell Science · PMID 28049718 · SBF-SEM
Curation note: (different n's for each quant)
Kelbauskas et al., 2017, Science Advances · PMID 29226240 · Optical tomography (LCCT)
Kelbauskas et al., 2017, Science Advances · PMID 29226240 · Optical tomography (LCCT)
Valm et al., 2017, Nature · PMID 28538724 · Fluorescence (LLS)
Feng et al., 2016, Journal of Morphology · PMID 26877112 · SBF-SEM
Curation note: Randomly selected spermatozoa
Ota et al., 2016, Biotechnology for Biofuels · PMID 26811738 · ssTEM
Curation note: 1 per condition
Gluenz et al., 2015, Methods in Cell Biology · PMID 25837406 · SBF-SEM
Curation note: Fig 9. original data
Niclis et al., 2015, J Royal Society Interface · PMID 26063819 · SXT
Niclis et al., 2015, J Royal Society Interface · PMID 26063819 · SXT
Rodriguez et al., 2015, IUCrJ · PMID 26306199 · X-ray diffraction
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Wacker et al., 2015, Journal of Microscopy · PMID 25611576 · SEM-AT
Murata et al., 2014, Ultramicroscopy · PMID 24935612 · STEM
Carlson et al., 2013, Microscopy and Microanalysis · PMID 23332214 · SXT
Curation note: A yeast cell
Hanssen et al., 2013, Cellular Microbiology · PMID 23461734 · ET (chemical)
Curation note: 17
Wayama et al., 2013, PLoS ONE · PMID 23326471 · ssTEM
Curation note: 1 coccoid cell, 1 cyst cell
Hummel et al., 2012, PLoS One · PMID 23300909 · SXT
Curation note: (6 wt; 8 mutant)
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Zheng et al., 2012, Microscopy research and technique · PMID 22505187 · HXT
Murphy et al., 2011, Journal of Structural Biology · PMID 21907806 · FIB-SEM
Ramos et al., 2011, Cytometry A · PMID 21567937 · ssTEM
Uchida et al., 2011, Yeast · PMID 21360734 · SXT
Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · PMID 21908548 · ssTEM
Curation note: (3 G1, 3 early G1)
Hanssen et al., 2010, Methods in Cell Biology · PMID 20869520 · ET (cryo)
Jiang et al., 2010, PNAS · PMID 20534442 · X-ray diffraction
Heymann et al., 2009, Journal of Structural Biology · PMID 19116171 · FIB-SEM (IA-SEM)
Uchida et al., 2009, Proc Natl Acad Sci USA · PMID 19880740 · SXT
Curation note: split between yeast-like and germ tube (life cycle)
Noske et al., 2008, Journal of Structural Biology · PMID 18069000 · ET (Cryo)
Parkinson et al., 2008, Journal of Structural Biology · PMID 18387313 · SXT
Curation note: 1 early cc, 1 pre-division, 1 mother & 1 daughter (attached)
Henderson et al., 2007, PLoS One · PMID 17710148 · ET (cryo)
Curation note: 10 (6 best cells used for quantitation) (52 imaged total); 23 dark-to-light transition; 29 light-to-dark transition;
Perktold et al., 2007, FEMS Yeast Res · PMID 17419771 · ssTEM
Curation note: at least one chemically fixed and one cryofixed
Moderate comparability; useful for targeted comparison with technical caveats.
This selection includes multiple dataset records from the same paper: Deshmukh 2024. Treat the result as an within-study alignment check, not independent cross-study validation.