Corpus

Search the Whole-Cell Imaging Corpus.

Filter the atlas, inspect records in card view, switch to table when you want a denser scan, and build a compare set from either view.

Use This Page

scanfilteropen recordscompare

Table view is best for scanning fast. Cards give more context. Compare selection now works in both views, and the drawer follows you until you clear it or open Compare.

Most Common Traits in This Slice

A quick snapshot of the active result set. Click a trait to narrow the corpus to that subset.

datasets: 20 organelle: mitochondria organelle: nucleus modality: FIB-SEM modality: SBF-SEM

20 results (Public data only)

Cards Table

Export:CSV JSON BibTeX Clear all

In this slice of the corpus, 20 dataset records match. FIB-SEM is the most common imaging family and mitochondria is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is mitochondria:nucleus.

Dataset	Cell Type	Modality	Voxel Size (XY/Z nm)	Sample Size	Data Publicly Available
Leishmania mexicana whole-cell dataset (SBF-SEM) Hair et al., 2024, PLOS Pathogens · PMID 38416776	Leishmania mexicana Leishmania mexicana	SBF-SEM	5 x 87.5 nm voxel (XY/Z)	51	Partial
Encephalitozoon intestinalis whole-cell dataset (SBF-SEM) Antao et al., 2023, Nature Communications · PMID 37996434	Encephalitozoon intestinalis Encephalitozoon intestinalis	SBF-SEM	2 x 45 nm voxel (XY/Z)	21	Partial
Vero (Cercopithecus aethiops) whole-cell dataset (SBF-SEM) Antao et al., 2023, Nature Communications · PMID 37996434	Vero (Cercopithecus aethiops) NHP	SBF-SEM	2 x 45 nm voxel (XY/Z)	4	Partial
Sanguina nivaloides whole-cell dataset (FIB-SEM) Ezzedine et al., 2023, Nature Communications · PMID 37980360	Sanguina nivaloides Sanguina nivaloides	FIB-SEM	9 x 9 nm voxel (XY/Z) isotropic	2	Complete
Danio rerio, hair cells whole-cell dataset (SBF-SEM) McQuate et al., 2023, eLife · PMID 36912880	Danio rerio, hair cells Danio rerio	SBF-SEM	5 x 45 nm voxel (XY/Z)	134	Partial
Danio rerio, supporting cells whole-cell dataset (SBF-SEM) McQuate et al., 2023, eLife · PMID 36912880	Danio rerio, supporting cells Danio rerio	SBF-SEM	5 x 45 nm voxel (XY/Z)	12	Partial
Ensiculifera tyrrhenica whole-cell dataset (FIB-SEM) Mocaer et al., 2023, Journal of Cell Science · PMID 37455654	Ensiculifera tyrrhenica Ensiculifera tyrrhenica	FIB-SEM	8 x 8 nm voxel (XY/Z) isotropic	1	Partial
M. musculus, beta cell whole-cell dataset (FIB-SEM) Muller et al., 2021, Journal of Cell Biology · PMID 33326005	M. musculus, beta cell M. musculus	FIB-SEM	4 x 4 nm voxel (XY/Z) isotropic	7	Partial
Micromonas whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064	Micromonas Protist (plankton)	FIB-SEM	6 x 6 nm voxel (XY/Z) isotropic	3	Partial
Emiliana whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064	Emiliana Protist (plankton)	FIB-SEM	6 x 6 nm voxel (XY/Z) isotropic	3	Partial
Symbiodinium whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064	Symbiodinium Protist (plankton)	FIB-SEM	6 x 6 nm voxel (XY/Z) isotropic	3	Partial
Galdieria whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064	Galdieria Protist (plankton)	FIB-SEM	6 x 6 nm voxel (XY/Z) isotropic	3	Partial
Phaeodactylum whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064	Phaeodactylum Protist (plankton)	FIB-SEM	6 x 6 nm voxel (XY/Z) isotropic	3	Partial
Nannochloropsis whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064	Nannochloropsis Protist (plankton)	FIB-SEM	6 x 6 nm voxel (XY/Z) isotropic	3	Partial
Pelagomonas whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064	Pelagomonas Protist (plankton)	FIB-SEM	6 x 6 nm voxel (XY/Z) isotropic	3	Partial
Phaeocystis cordata whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, PNAS · PMID 34215695	Phaeocystis cordata Phaeocystis cordata	FIB-SEM	7.5 x 7.5 nm voxel (XY/Z) isotropic	27	Partial
Plasmodium falciparum whole-cell dataset (FIB-SEM) Rudlaff et al., 2020, PLOS Pathogens · PMID 32511279	Plasmodium falciparum Plasmodium falciparum	FIB-SEM	5 x 20 nm voxel (XY/Z)	11	Partial
Salpingoeca rosetta whole-cell dataset (ssTEM) Laundon et al., 2019, PLOS Biology · PMID 30978201	Salpingoeca rosetta Salpingoeca rosetta	ssTEM	Unknown	6	Partial
Oscarella carmela, choanocytes whole-cell dataset (ssTEM) Laundon et al., 2019, PLOS Biology · PMID 30978201	Oscarella carmela, choanocytes Oscarella carmela	ssTEM	Unknown	5	Partial
Plasmodium falciparum whole-cell dataset (SBF-SEM) Sakaguchi et al., 2016, Journal of Structural Biology · PMID 26772147	Plasmodium falciparum Plasmodium falciparum	SBF-SEM	8.22 x 70 nm voxel (XY/Z)	22	Partial

Compare Mode Preview

Example Compare Summary

Moderate comparability; useful for targeted comparison with technical caveats.

Shared Fields

cell_types: nonespecies: Danio rerioorganelles: flagella/cilia, mitochondriaorganelle_pairs: flagella/cilia:mitochondriametric_families: count, dimensions, other, volume, volume_fractioncomparator_classes: developmental stagemodality_families: EM

Key Differences

modalities: SBF-SEMsample_size_buckets: 11-50, 51+public_data_statuses: partialboundary_confirmation: yes

Comparability Score:60 / 100

How It's Derived