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In this slice of the corpus, 63 dataset records match. FIB-SEM is the most common imaging family and nucleus is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is mitochondria:nucleus.
Hair et al., 2024, PLOS Pathogens · SBF-SEM
Curation note: Some public data available. 41 in vitro, 10 sand fly-derived
Antao et al., 2023, Nature Communications · SBF-SEM
Curation note: Some public data available. 21+ E.i. ("A minimum of 7 parasites were segmented completely per condition" [sporonts, sporoblasts, spores])
Antao et al., 2023, Nature Communications · SBF-SEM
Curation note: Some public data available. 4 Vero (inc PV, Fig 5)
Ezzedine et al., 2023, Nature Communications · FIB-SEM
Curation note: Public data available. 1 chemically fixed, 1 cryo-fixed
Feng et al., 2023, Protoplasma · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Jadav et al., 2023, Journal of Structural Biology · SBF-SEM
Mocaer et al., 2023, Journal of Cell Science · FIB-SEM
Curation note: Some public data available.
Tashyreva et al., 2023, mBio · SBF-SEM
Attias et al., 2022, Micron · FIB-SEM
Curation note: Unclear
Burrell et al., 2022, PLoS Pathogens · SBF-SEM
Johkura et al., 2022, Microscopy · SBF-SEM
Curation note: 4 single-nuc, 4 binuc
Midorikawa et al., 2022, PNAS Nexus · FESEM
Curation note: 3L, 3D
Zechmann et al., 2022, Planta · FIB-SEM
Zechmann et al., 2022, Planta · ssTEM
Zechmann et al., 2022, Planta · FIB-SEM
Zechmann et al., 2022, Planta · ssTEM
Decelle et al., 2021, Environmental Microbiology · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Muller et al., 2021, Journal of Cell Biology · FIB-SEM
Curation note: Some public data available. 3 low-glucose, 4 high-glucose
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available. 3 cells per species
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, PNAS · FIB-SEM
Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))
Hoffman et al., 2020, Science · FIB-SEM
Pollreisz et al., 2020, Invest Ophthalmol Vis Sci. · SBF-SEM
Rudlaff et al., 2020, PLOS Pathogens · FIB-SEM
Curation note: Some public data available.
Wu et al., 2020, Structure · FIB-SEM
Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"
Cui et al., 2019, Nature Plants · ET (cryo)
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Decelle et al., 2019, Current Biology · FIB-SEM
Curation note: 8 symbiotic, 10 free-living; 2 representative cells shown
Laundon et al., 2019, PLOS Biology · ssTEM
Curation note: Some public data available. 3 colonial, 3 single
Laundon et al., 2019, PLOS Biology · ssTEM
Curation note: Some public data available.
Hughes et al., 2017, Journal of Cell Science · SBF-SEM
Curation note: (different n's for each quant)
Oi et al., 2017, Annals of Botany · FIB-SEM
Curation note: 1 visible 3D reconstruction, 2 addtl in supp movies (chloroplast counts)
Feng et al., 2016, Journal of Morphology · SBF-SEM
Curation note: Randomly selected spermatozoa
Ota et al., 2016, Biotechnology for Biofuels · ssTEM
Curation note: 1 per condition
Sakaguchi et al., 2016, Journal of Structural Biology · SBF-SEM
Curation note: Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles
Gluenz et al., 2015, Methods in Cell Biology · SBF-SEM
Curation note: Fig 9. original data
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Murata et al., 2014, Ultramicroscopy · STEM
Hanssen et al., 2013, Cellular Microbiology · ET (chemical)
Curation note: 17
Wayama et al., 2013, PLoS ONE · ssTEM
Curation note: 1 coccoid cell, 1 cyst cell
Girard-Dias et al., 2012, Histochemistry and Cell Biology · ET (cryo)
Curation note: (M&M mentions "35 tomograms (appox. 25 from epimastigotes and 10 from amastigotes and epimastigotes)"
Medeiros et al., 2012, PLoS One · FIB-SEM
Curation note: 10 quantified (Table 1); 1 or 2 whole cell images
Wei et al., 2012, Biotechniques · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · FIB-SEM
Curation note: 1 cell per resolution
Murphy et al., 2011, Journal of Structural Biology · FIB-SEM
Ramos et al., 2011, Cytometry A · ssTEM
Hanssen et al., 2010, Methods in Cell Biology · ET (cryo)
Motta et al., 2010, PLoS ONE · FIB-SEM
Curation note: "The description of events and timings in the C. deanei cell cycle were based on counts of 1000 cells."
Heymann et al., 2009, Journal of Structural Biology · FIB-SEM (IA-SEM)
Hohmann-Marriott et al., 2009, Nature Methods · STEM
Ferreira et al., 2008, Annals of the Brazilian Academy of Sciences · ssTEM
Noske et al., 2008, Journal of Structural Biology · ET (Cryo)
Henderson et al., 2007, PLoS One · ET (cryo)
Curation note: 10 (6 best cells used for quantitation) (52 imaged total); 23 dark-to-light transition; 29 light-to-dark transition;
Perktold et al., 2007, FEMS Yeast Res · ssTEM
Curation note: at least one chemically fixed and one cryofixed
High biological overlap with enough shared structure to justify direct comparison.