Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (Fluorescence)
Kichuk et al., 2024, Cell Reports Methods · Fluorescence
ResSSBoundary
Key Organelles
nucleusermitochondria
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24 results filtered by organelle: mitochondria filtered by metric: contacts
In this slice of the corpus, 24 dataset records match. FIB-SEM is the most common imaging family and mitochondria is the organelle that appears most often with contacts as the most common metric family. The most common captured organelle pair is mitochondria:nucleus.
Card Tag Legend
ResResolution values are reported.
SSSample size is reported.
BoundaryWhole-cell boundary is confirmed.
Public DataReusable public data is known to exist.
BorderlineRecord has a caveat relative to the main corpus criteria.
Encephalitozoon intestinalis
Encephalitozoon intestinalis whole-cell dataset (SBF-SEM)
Antao et al., 2023, Nature Communications · SBF-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusermitochondria
Curation note: Some public data available. 21+ E.i. ("A minimum of 7 parasites were segmented completely per condition" [sporonts, sporoblasts, spores])
Sanguina nivaloides
Sanguina nivaloides whole-cell dataset (FIB-SEM)
Ezzedine et al., 2023, Nature Communications · FIB-SEM
ResSSBoundaryData: Complete
Key Organelles
nucleusmitochondrialipid droplets
Curation note: Public data available. 1 chemically fixed, 1 cryo-fixed
MCF10A (breast epithelia)
MCF10A (breast epithelia) whole-cell dataset (Fluorescence)
Wang et al., 2023, iScience · Fluorescence
ResSSBoundary
Key Organelles
nucleusmitochondriaearly endosome
MDA231 (breast cancer)
MDA231 (breast cancer) whole-cell dataset (Fluorescence)
Wang et al., 2023, iScience · Fluorescence
ResSSBoundary
Key Organelles
nucleusmitochondriaearly endosome
Curation note: 10 cells per 4 cell lines per 2 culture conditions
T47D (breast cancer)
T47D (breast cancer) whole-cell dataset (Fluorescence)
Wang et al., 2023, iScience · Fluorescence
ResSSBoundary
Key Organelles
nucleusmitochondriaearly endosome
AU565 (breast cancer)
AU565 (breast cancer) whole-cell dataset (Fluorescence)
Wang et al., 2023, iScience · Fluorescence
ResSSBoundary
Key Organelles
nucleusmitochondriaearly endosome
INS-1E (R. norvegicus)
INS-1E (R. norvegicus) whole-cell dataset (SXT)
Loconte et al., 2022, Structure · SXT
ResSSBoundary
Key Organelles
nucleusmitochondriavesicles
Arabidopsis thaliana, mesophyll
Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM)
Midorikawa et al., 2022, PNAS Nexus · FESEM
ResSSBoundary
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: 3L, 3D
M. musculus, beta cell
M. musculus, beta cell whole-cell dataset (FIB-SEM)
Muller et al., 2021, Journal of Cell Biology · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriagolgi
Curation note: Some public data available. 3 low-glucose, 4 high-glucose
Micromonas
Micromonas whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, Nature Communications · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriachloroplast/plastid
Curation note: Some public data available. 3 cells per species
Emiliana
Emiliana whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, Nature Communications · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriachloroplast/plastid
Curation note: Some public data available.
Symbiodinium
Symbiodinium whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, Nature Communications · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriachloroplast/plastid
Curation note: Some public data available.
Galdieria
Galdieria whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, Nature Communications · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriachloroplast/plastid
Curation note: Some public data available.
Phaeodactylum
Phaeodactylum whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, Nature Communications · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriachloroplast/plastid
Curation note: Some public data available.
Nannochloropsis
Nannochloropsis whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, Nature Communications · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriachloroplast/plastid
Curation note: Some public data available.
Pelagomonas
Pelagomonas whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, Nature Communications · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriachloroplast/plastid
Curation note: Some public data available.
Phaeocystis cordata
Phaeocystis cordata whole-cell dataset (FIB-SEM)
Uwizeye et al., 2021, PNAS · FIB-SEM
ResSSBoundaryData: Partial
Key Organelles
nucleusmitochondriavacuole/lysosome
Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))
Salpingoeca rosetta
Salpingoeca rosetta whole-cell dataset (ssTEM)
Laundon et al., 2019, PLOS Biology · ssTEM
SSBoundaryData: Partial
Key Organelles
nucleusermitochondria
Curation note: Some public data available. 3 colonial, 3 single
Oscarella carmela, choanocytes
Oscarella carmela, choanocytes whole-cell dataset (ssTEM)
Laundon et al., 2019, PLOS Biology · ssTEM
SSBoundaryData: Partial
Key Organelles
nucleusermitochondria
Curation note: Some public data available.
COS-7 (Cercopithecus aethiops)
COS-7 (Cercopithecus aethiops) whole-cell dataset (Fluorescence (LLS))
Valm et al., 2017, Nature · Fluorescence (LLS)
ResSSBoundary
Key Organelles
ermitochondriavacuole/lysosome
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (ssTEM)
Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · ssTEM
ResSSBoundary
Key Organelles
ermitochondriavacuole/lysosome
Curation note: (3 G1, 3 early G1)
M. musculus, beta cell
M. musculus, beta cell whole-cell dataset (ET (Cryo))
Noske et al., 2008, Journal of Structural Biology · ET (Cryo)
ResSSBoundary
Key Organelles
nucleusmitochondriagolgi
Saccharomyces cerevisiae
Saccharomyces cerevisiae whole-cell dataset (ssTEM)
Perktold et al., 2007, FEMS Yeast Res · ssTEM
ResSSBoundary
Key Organelles
nucleusermitochondria
Curation note: at least one chemically fixed and one cryofixed
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Example Compare Summary
Moderate comparability; useful for targeted comparison with technical caveats.
Shared Fields
cell_types: Saccharomyces cerevisiaespecies: Saccharomyces cerevisiaeorganelles: er, mitochondriaorganelle_pairs: er:mitochondriametric_families: contacts, distance, volume, volume_fractioncomparator_classes: nonemodality_families: none
Key Differences
modalities: Fluorescence, ssTEMsample_size_buckets: 2-10, 51+public_data_statuses: noneboundary_confirmation: yes
Comparability Score:62 / 100
How It's Derived