Corpus
Search the Whole-Cell Imaging Corpus.
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Most Common Traits in This Slice
A quick snapshot of the active result set. Click a trait to narrow the corpus to that subset.
20 results filtered by organelle: chloroplast/plastid filtered by metric: surface_area
In this slice of the corpus, 20 dataset records match. FIB-SEM is the most common imaging family and chloroplast/plastid is the organelle that appears most often with surface_area as the most common metric family. The most common captured organelle pair is chloroplast/plastid:nucleus.
| Compare | Dataset | Cell Type | Modality | Voxel Size (XY/Z nm) | Sample Size | Data Publicly Available |
|---|---|---|---|---|---|---|
| Sanguina nivaloides whole-cell dataset (FIB-SEM) Ezzedine et al., 2023, Nature Communications · PMID 37980360 | Sanguina nivaloides Sanguina nivaloides | FIB-SEM | 9 x 9 nm voxel (XY/Z) isotropic | 2 | Complete | |
| Chlorella pyrenoidosa whole-cell dataset (FIB-SEM) Feng et al., 2023, Protoplasma · PMID 36416933 | Chlorella pyrenoidosa Chlorella pyrenoidosa | FIB-SEM | 2.44 x 8 nm voxel (XY/Z) | 9 | Not Indexed | |
| Arabidopsis thaliana, mesophyll whole-cell dataset (FESEM) Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 | Arabidopsis thaliana, mesophyll Arabidopsis thaliana | FESEM | 10 x 100 nm voxel (XY/Z) | 6 | Not Indexed | |
| Nicotiana tabacum whole-cell dataset (FIB-SEM) Zechmann et al., 2022, Planta · PMID 35522384 | Nicotiana tabacum Nicotiana tabacum | FIB-SEM | Unknown | 1 | Not Indexed | |
| Nicotiana tabacum whole-cell dataset (ssTEM) Zechmann et al., 2022, Planta · PMID 35522384 | Nicotiana tabacum Nicotiana tabacum | ssTEM | Unknown | 1 | Not Indexed | |
| Cucurbita pepo whole-cell dataset (FIB-SEM) Zechmann et al., 2022, Planta · PMID 35522384 | Cucurbita pepo Cucurbita pepo | FIB-SEM | Unknown | 1 | Not Indexed | |
| Cucurbita pepo whole-cell dataset (ssTEM) Zechmann et al., 2022, Planta · PMID 35522384 | Cucurbita pepo Cucurbita pepo | ssTEM | Unknown | 1 | Not Indexed | |
| Brandtodinium nutricula whole-cell dataset (FIB-SEM) Decelle et al., 2021, Environmental Microbiology · PMID 34499794 | Brandtodinium nutricula Brandtodinium nutricula | FIB-SEM | 8 x 8 nm voxel (XY/Z) isotropic | 7 | Not Indexed | |
| Micromonas whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064 | Micromonas Protist (plankton) | FIB-SEM | 6 x 6 nm voxel (XY/Z) isotropic | 3 | Partial | |
| Emiliana whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064 | Emiliana Protist (plankton) | FIB-SEM | 6 x 6 nm voxel (XY/Z) isotropic | 3 | Partial | |
| Symbiodinium whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064 | Symbiodinium Protist (plankton) | FIB-SEM | 6 x 6 nm voxel (XY/Z) isotropic | 3 | Partial | |
| Galdieria whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064 | Galdieria Protist (plankton) | FIB-SEM | 6 x 6 nm voxel (XY/Z) isotropic | 3 | Partial | |
| Phaeodactylum whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064 | Phaeodactylum Protist (plankton) | FIB-SEM | 6 x 6 nm voxel (XY/Z) isotropic | 3 | Partial | |
| Nannochloropsis whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064 | Nannochloropsis Protist (plankton) | FIB-SEM | 6 x 6 nm voxel (XY/Z) isotropic | 3 | Partial | |
| Pelagomonas whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, Nature Communications · PMID 33594064 | Pelagomonas Protist (plankton) | FIB-SEM | 6 x 6 nm voxel (XY/Z) isotropic | 3 | Partial | |
| Phaeocystis cordata whole-cell dataset (FIB-SEM) Uwizeye et al., 2021, PNAS · PMID 34215695 | Phaeocystis cordata Phaeocystis cordata | FIB-SEM | 7.5 x 7.5 nm voxel (XY/Z) isotropic | 27 | Partial | |
| Cylindrotheca sp. whole-cell dataset (Optical tomography (diffraction)) Umemura et al., 2020, MethodsX · PMID 32382522 | Cylindrotheca sp. Cylindrotheca sp. | Optical tomography (diffraction) | 100 x 360 nm voxel (XY/Z) | 1 | Not Indexed | |
| Phaeocystis cordata whole-cell dataset (FIB-SEM) Decelle et al., 2019, Current Biology · PMID 30827917 | Phaeocystis cordata Phaeocystis cordata | FIB-SEM | 8 x 8 nm voxel (XY/Z) isotropic | 18 | Not Indexed | |
| Oryza sativa, mesophyll whole-cell dataset (FIB-SEM) Oi et al., 2017, Annals of Botany · PMID 28444369 | Oryza sativa, mesophyll Oryza sativa | FIB-SEM | 25 x 50 nm voxel (XY/Z) | 3 | Not Indexed | |
| Ostreococcus tauri whole-cell dataset (ET (cryo)) Henderson et al., 2007, PLoS One · PMID 17710148 | Ostreococcus tauri Ostreococcus tauri | ET (cryo) | 1.2 x 1.2 nm voxel (XY/Z) isotropic | 10 | Not Indexed |
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Example Compare Summary
High biological overlap with enough shared structure to justify direct comparison.
Shared Fields
cell_types: Nicotiana tabacumspecies: Nicotiana tabacumorganelles: chloroplast/plastid, mitochondria, nucleus, peroxisome, vacuole/lysosomeorganelle_pairs: chloroplast/plastid:mitochondria, chloroplast/plastid:nucleus, chloroplast/plastid:peroxisome, chloroplast/plastid:vacuole/lysosome, mitochondria:nucleus, mitochondria:peroxisome, mitochondria:vacuole/lysosome, nucleus:peroxisome, nucleus:vacuole/lysosome, peroxisome:vacuole/lysosomemetric_families: count, dimensions, surface_area, volume, volume_fractioncomparator_classes: cell typemodality_families: EM
Key Differences
modalities: FIB-SEM, ssTEMsample_size_buckets: 1public_data_statuses: noneboundary_confirmation: yes
Comparability Score:100 / 100
How It's Derived