Leishmania mexicana whole-cell dataset (SBF-SEM)
Hair et al., 2024, PLOS Pathogens · SBF-SEM
Curation note: Some public data available. 41 in vitro, 10 sand fly-derived
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In this slice of the corpus, 17 dataset records match. FIB-SEM is the most common imaging family and vacuole/lysosome is the organelle that appears most often with surface_area as the most common metric family. The most common captured organelle pair is nucleus:vacuole/lysosome.
Hair et al., 2024, PLOS Pathogens · SBF-SEM
Curation note: Some public data available. 41 in vitro, 10 sand fly-derived
Bianco et al., 2023, Small Methods · Optical tomography (phase contrast)
Feng et al., 2023, Protoplasma · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Midorikawa et al., 2022, PNAS Nexus · FESEM
Curation note: 3L, 3D
Zechmann et al., 2022, Planta · FIB-SEM
Zechmann et al., 2022, Planta · ssTEM
Zechmann et al., 2022, Planta · FIB-SEM
Zechmann et al., 2022, Planta · ssTEM
Decelle et al., 2021, Environmental Microbiology · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Uwizeye et al., 2021, PNAS · FIB-SEM
Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))
Umemura et al., 2020, MethodsX · Optical tomography (diffraction)
Sakaguchi et al., 2016, Journal of Structural Biology · SBF-SEM
Curation note: Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles
Niclis et al., 2015, J Royal Society Interface · SXT
Niclis et al., 2015, J Royal Society Interface · SXT
Medeiros et al., 2012, PLoS One · FIB-SEM
Curation note: 10 quantified (Table 1); 1 or 2 whole cell images
Uchida et al., 2011, Yeast · SXT
Perktold et al., 2007, FEMS Yeast Res · ssTEM
Curation note: at least one chemically fixed and one cryofixed
Moderate comparability; useful for targeted comparison with technical caveats.