Saccharomyces cerevisiae whole-cell dataset (SXT)
Egebjerg et al., 2024, Autophagy · PMID 37908116 · SXT
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A quick reading of the active result set. Click a trait to narrow the corpus to that subset; this is a frequency snapshot, not a quality ranking.
In this slice of the corpus, 38 dataset records match. SXT is the most common imaging family and vacuole/lysosome is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is nucleus:vacuole/lysosome.
Egebjerg et al., 2024, Autophagy · PMID 37908116 · SXT
Hair et al., 2024, PLOS Pathogens · PMID 38416776 · SBF-SEM
Curation note: Some public data available. 41 in vitro, 10 sand fly-derived
Xu et al., 2024, ACS Nano · PMID 38198284 · SXT
Curation note: 6 ctrl + 6 AgNP-treated
Antao et al., 2023, Nature Communications · PMID 37996434 · SBF-SEM
Curation note: Some public data available. 21+ E.i. ("A minimum of 7 parasites were segmented completely per condition" [sporonts, sporoblasts, spores])
Bianco et al., 2023, Small Methods · PMID 37670547 · Optical tomography (phase contrast)
Dang et al., 2023, ACS Nano · PMID 37156644 · SXT
Feng et al., 2023, Protoplasma · PMID 36416933 · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Mirasole et al., 2023, Scientific Reports · PMID 37169939 · Fluorescence
Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 · FESEM
Curation note: 3L, 3D
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
Decelle et al., 2021, Environmental Microbiology · PMID 34499794 · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Uwizeye et al., 2021, PNAS · PMID 34215695 · FIB-SEM
Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))
Umemura et al., 2020, MethodsX · PMID 32382522 · Optical tomography (diffraction)
Cui et al., 2019, Nature Plants · PMID 30559414 · ET (cryo)
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Laundon et al., 2019, PLOS Biology · PMID 30978201 · ssTEM
Curation note: Some public data available. 3 colonial, 3 single
Laundon et al., 2019, PLOS Biology · PMID 30978201 · ssTEM
Curation note: Some public data available.
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · SXT
Curation note: 1 G1 and 1 budding
Yao et al., 2018, IUCrJ · PMID 29765603 · STXM
Valm et al., 2017, Nature · PMID 28538724 · Fluorescence (LLS)
Ota et al., 2016, Biotechnology for Biofuels · PMID 26811738 · ssTEM
Curation note: 1 per condition
Sakaguchi et al., 2016, Journal of Structural Biology · PMID 26772147 · SBF-SEM
Curation note: Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles
Niclis et al., 2015, J Royal Society Interface · PMID 26063819 · SXT
Niclis et al., 2015, J Royal Society Interface · PMID 26063819 · SXT
Hummel et al., 2012, PLoS One · PMID 23300909 · SXT
Curation note: (6 wt; 8 mutant)
Medeiros et al., 2012, PLoS One · PMID 22432024 · FIB-SEM
Curation note: 10 quantified (Table 1); 1 or 2 whole cell images
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Zheng et al., 2012, Microscopy research and technique · PMID 22505187 · HXT
Uchida et al., 2011, Yeast · PMID 21360734 · SXT
Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · PMID 21908548 · ssTEM
Curation note: (3 G1, 3 early G1)
Jiang et al., 2010, PNAS · PMID 20534442 · X-ray diffraction
Uchida et al., 2009, Proc Natl Acad Sci USA · PMID 19880740 · SXT
Curation note: split between yeast-like and germ tube (life cycle)
Parkinson et al., 2008, Journal of Structural Biology · PMID 18387313 · SXT
Curation note: 1 early cc, 1 pre-division, 1 mother & 1 daughter (attached)
Perktold et al., 2007, FEMS Yeast Res · PMID 17419771 · ssTEM
Curation note: at least one chemically fixed and one cryofixed
Moderate comparability; useful for targeted comparison with technical caveats.