Sanguina nivaloides whole-cell dataset (FIB-SEM)
Ezzedine et al., 2023, Nature Communications · FIB-SEM
Curation note: Public data available. 1 chemically fixed, 1 cryo-fixed
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In this slice of the corpus, 24 dataset records match. FIB-SEM is the most common imaging family and chloroplast/plastid is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is chloroplast/plastid:nucleus.
Ezzedine et al., 2023, Nature Communications · FIB-SEM
Curation note: Public data available. 1 chemically fixed, 1 cryo-fixed
Feng et al., 2023, Protoplasma · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Mirasole et al., 2023, Scientific Reports · Fluorescence
Mocaer et al., 2023, Journal of Cell Science · FIB-SEM
Curation note: Some public data available.
Midorikawa et al., 2022, PNAS Nexus · FESEM
Curation note: 3L, 3D
Zechmann et al., 2022, Planta · FIB-SEM
Zechmann et al., 2022, Planta · ssTEM
Zechmann et al., 2022, Planta · FIB-SEM
Zechmann et al., 2022, Planta · ssTEM
Decelle et al., 2021, Environmental Microbiology · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available. 3 cells per species
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, PNAS · FIB-SEM
Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))
Cui et al., 2019, Nature Plants · ET (cryo)
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Oi et al., 2017, Annals of Botany · FIB-SEM
Curation note: 1 visible 3D reconstruction, 2 addtl in supp movies (chloroplast counts)
Ota et al., 2016, Biotechnology for Biofuels · ssTEM
Curation note: 1 per condition
Wayama et al., 2013, PLoS ONE · ssTEM
Curation note: 1 coccoid cell, 1 cyst cell
Hummel et al., 2012, PLoS One · SXT
Curation note: (6 wt; 8 mutant)
Henderson et al., 2007, PLoS One · ET (cryo)
Curation note: 10 (6 best cells used for quantitation) (52 imaged total); 23 dark-to-light transition; 29 light-to-dark transition;
High biological overlap with enough shared structure to justify direct comparison.