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In this slice of the corpus, 47 dataset records match. FIB-SEM is the most common imaging family and nucleus is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is nucleus:vacuole/lysosome.
Hair et al., 2024, PLOS Pathogens · SBF-SEM
Curation note: Some public data available. 41 in vitro, 10 sand fly-derived
Xu et al., 2024, ACS Nano · SXT
Curation note: 6 ctrl + 6 AgNP-treated
Antao et al., 2023, Nature Communications · SBF-SEM
Curation note: Some public data available. 21+ E.i. ("A minimum of 7 parasites were segmented completely per condition" [sporonts, sporoblasts, spores])
Bianco et al., 2023, Small Methods · Optical tomography (phase contrast)
Dang et al., 2023, ACS Nano · SXT
Feng et al., 2023, Protoplasma · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Mirasole et al., 2023, Scientific Reports · Fluorescence
Midorikawa et al., 2022, PNAS Nexus · FESEM
Curation note: 3L, 3D
Zechmann et al., 2022, Planta · FIB-SEM
Zechmann et al., 2022, Planta · ssTEM
Zechmann et al., 2022, Planta · FIB-SEM
Zechmann et al., 2022, Planta · ssTEM
Decelle et al., 2021, Environmental Microbiology · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Uwizeye et al., 2021, PNAS · FIB-SEM
Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))
Rudlaff et al., 2020, PLOS Pathogens · FIB-SEM
Curation note: Some public data available.
Wu et al., 2020, Structure · FIB-SEM
Curation note: comparing 3 modalities on 1 cell, FIB-SEM produces the only "whole cell"
Cui et al., 2019, Nature Plants · ET (cryo)
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Laundon et al., 2019, PLOS Biology · ssTEM
Curation note: Some public data available. 3 colonial, 3 single
Laundon et al., 2019, PLOS Biology · ssTEM
Curation note: Some public data available.
Liu et al., 2018, Journal of Microscopy · SXT
Curation note: 1 G1 and 1 budding
Yao et al., 2018, IUCrJ · STXM
Fogelqvist et al., 2017, Scientific Reports · SXT
Ota et al., 2016, Biotechnology for Biofuels · ssTEM
Curation note: 1 per condition
Sakaguchi et al., 2016, Journal of Structural Biology · SBF-SEM
Curation note: Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles
Diaz et al., 2015, Journal of Structural Biology · HXT (ptychography)
Niclis et al., 2015, J Royal Society Interface · SXT
Niclis et al., 2015, J Royal Society Interface · SXT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Curation note: 1 thymus, 1 cytotoxic t cell, 1 adrenal medulla neutrophil, 1 ea of unknown cell types (cogwheel and longer process)
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Wacker et al., 2015, Journal of Microscopy · SEM-AT
Murata et al., 2014, Ultramicroscopy · STEM
Carlson et al., 2013, Microscopy and Microanalysis · SXT
Curation note: A yeast cell
Girard-Dias et al., 2012, Histochemistry and Cell Biology · ET (cryo)
Curation note: (M&M mentions "35 tomograms (appox. 25 from epimastigotes and 10 from amastigotes and epimastigotes)"
Hummel et al., 2012, PLoS One · SXT
Curation note: (6 wt; 8 mutant)
Medeiros et al., 2012, PLoS One · FIB-SEM
Curation note: 10 quantified (Table 1); 1 or 2 whole cell images
Wei et al., 2012, Biotechniques · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · FIB-SEM
Curation note: 1 cell per resolution
Uchida et al., 2011, Yeast · SXT
Hanssen et al., 2010, Methods in Cell Biology · ET (cryo)
Jiang et al., 2010, PNAS · X-ray diffraction
Hohmann-Marriott et al., 2009, Nature Methods · STEM
Uchida et al., 2009, Proc Natl Acad Sci USA · SXT
Curation note: split between yeast-like and germ tube (life cycle)
Parkinson et al., 2008, Journal of Structural Biology · SXT
Curation note: 1 early cc, 1 pre-division, 1 mother & 1 daughter (attached)
Perktold et al., 2007, FEMS Yeast Res · ssTEM
Curation note: at least one chemically fixed and one cryofixed
High biological overlap with enough shared structure to justify direct comparison.