M. musculus, alpha cell whole-cell dataset (SXT)
Deshmukh et al., 2024, Cells · PMID 38786091 · SXT
Curation note: 8 alpha, 7 beta
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A quick reading of the active result set. Click a trait to narrow the corpus to that subset; this is a frequency snapshot, not a quality ranking.
In this slice of the corpus, 90 dataset records match. FIB-SEM is the most common imaging family and nucleus is the organelle that appears most often with volume as the most common metric family. The most common captured organelle pair is mitochondria:nucleus.
Deshmukh et al., 2024, Cells · PMID 38786091 · SXT
Curation note: 8 alpha, 7 beta
Deshmukh et al., 2024, Cells · PMID 38786091 · SXT
Egebjerg et al., 2024, Autophagy · PMID 37908116 · SXT
Hair et al., 2024, PLOS Pathogens · PMID 38416776 · SBF-SEM
Curation note: Some public data available. 41 in vitro, 10 sand fly-derived
Kichuk et al., 2024, Cell Reports Methods · PMID 38232737 · Fluorescence
Xu et al., 2024, ACS Nano · PMID 38198284 · SXT
Curation note: 6 ctrl + 6 AgNP-treated
Antao et al., 2023, Nature Communications · PMID 37996434 · SBF-SEM
Curation note: Some public data available. 21+ E.i. ("A minimum of 7 parasites were segmented completely per condition" [sporonts, sporoblasts, spores])
Antao et al., 2023, Nature Communications · PMID 37996434 · SBF-SEM
Curation note: Some public data available. 4 Vero (inc PV, Fig 5)
Bianco et al., 2023, Small Methods · PMID 37670547 · Optical tomography (phase contrast)
Dang et al., 2023, ACS Nano · PMID 37156644 · SXT
Ezzedine et al., 2023, Nature Communications · PMID 37980360 · FIB-SEM
Curation note: Public data available. 1 chemically fixed, 1 cryo-fixed
Feng et al., 2023, Protoplasma · PMID 36416933 · FIB-SEM
Curation note: 3+ per growth stage; 20 imaged, 15 segmented, but 3 per stage chosen for reconstruction
Jadav et al., 2023, Journal of Structural Biology · PMID 37805154 · SBF-SEM
Koutsogiannis et al., 2023, Frontiers in Cellular and Infection Microbiology · PMID 37600951 · Optical tomography (diffraction)
Curation note: 1 WT, 2 cerS1 mutant
Matharu et al., 2023, Platelets · PMID 37933490 · FIB-SEM
Curation note: 63 including mito (606 total cell+AGl, 300 Ctrl, 306 COVID)
McQuate et al., 2023, eLife · PMID 36912880 · SBF-SEM
Curation note: Some public data available.
McQuate et al., 2023, eLife · PMID 36912880 · SBF-SEM
Curation note: Some public data available.
Mirasole et al., 2023, Scientific Reports · PMID 37169939 · Fluorescence
Mocaer et al., 2023, Journal of Cell Science · PMID 37455654 · FIB-SEM
Curation note: Some public data available.
Wang et al., 2023, iScience · PMID 37519903 · Fluorescence
Wang et al., 2023, iScience · PMID 37519903 · Fluorescence
Curation note: 10 cells per 4 cell lines per 2 culture conditions
Wang et al., 2023, iScience · PMID 37519903 · Fluorescence
Wang et al., 2023, iScience · PMID 37519903 · Fluorescence
Burrell et al., 2022, PLoS Pathogens · PMID 35816515 · SBF-SEM
Johkura et al., 2022, Microscopy · PMID 35535544 · SBF-SEM
Curation note: 4 single-nuc, 4 binuc
Li et al., 2022, PLoS One. · PMID 35324950 · SXT
Curation note: 40 tomograms from SXT extended to 132. unsure if those original 40 are included in the 132. 3 for analysis
Loconte et al., 2022, Structure · PMID 35148829 · SXT
Midorikawa et al., 2022, PNAS Nexus · PMID 36712360 · FESEM
Curation note: 3L, 3D
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
Zechmann et al., 2022, Planta · PMID 35522384 · FIB-SEM
Zechmann et al., 2022, Planta · PMID 35522384 · ssTEM
Decelle et al., 2021, Environmental Microbiology · PMID 34499794 · FIB-SEM
Curation note: 3 free-living, 4 symbiotic
Loconte et al., 2021, Cell Reports Methods · PMID 34729550 · SXT
Loconte et al., 2021, Cell Reports Methods · PMID 34729550 · SXT
Muller et al., 2021, Journal of Cell Biology · PMID 33326005 · FIB-SEM
Curation note: Some public data available. 3 low-glucose, 4 high-glucose
Pokrovskaya et al., 2021, Platelets · PMID 32815431 · SBF-SEM
Uwizeye et al., 2021, Nature Communications · PMID 33594064 · FIB-SEM
Curation note: Some public data available. 3 cells per species
Uwizeye et al., 2021, Nature Communications · PMID 33594064 · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · PMID 33594064 · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · PMID 33594064 · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · PMID 33594064 · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · PMID 33594064 · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, Nature Communications · PMID 33594064 · FIB-SEM
Curation note: Some public data available.
Uwizeye et al., 2021, PNAS · PMID 34215695 · FIB-SEM
Curation note: Some public data available. 20 free-living + 7 symbiotic (w/ Â and w/o host Acantharia (radiolarian protozoa, marine microplankton))
Hoffman et al., 2020, Science · PMID 31949053 · FIB-SEM
Pollreisz et al., 2020, Invest Ophthalmol Vis Sci. · PMID 32648890 · SBF-SEM
Umemura et al., 2020, MethodsX · PMID 32382522 · Optical tomography (diffraction)
White et al., 2020, Science Advances · PMID 33298443 · SXT
Curation note: 8 x 5 conditions
Cui et al., 2019, Nature Plants · PMID 30559414 · ET (cryo)
Curation note: 1 whole cell w multiple organelles; 3 whole-cell vacuole only
Decelle et al., 2019, Current Biology · PMID 30827917 · FIB-SEM
Curation note: 8 symbiotic, 10 free-living; 2 representative cells shown
Laundon et al., 2019, PLOS Biology · PMID 30978201 · ssTEM
Curation note: Some public data available. 3 colonial, 3 single
Laundon et al., 2019, PLOS Biology · PMID 30978201 · ssTEM
Curation note: Some public data available.
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · SXT
Curation note: 1 G1 and 1 budding
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Curation note: 1 of each cell type (see below); 3 time points for zebrafish neural progenitor
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Liu et al., 2018, Journal of Microscopy · PMID 28960304 · Fluorescence (AO-LLSM)
Yao et al., 2018, IUCrJ · PMID 29765603 · STXM
Cooper et al., 2017, Parasites & Vectors · PMID 28499405 · FIB-SEM
Curation note: 2 full reconstructions; quants from 25 cells, only kinetoplasts segmented
Hughes et al., 2017, Journal of Cell Science · PMID 28049718 · SBF-SEM
Curation note: (different n's for each quant)
Kelbauskas et al., 2017, Science Advances · PMID 29226240 · Optical tomography (LCCT)
Kelbauskas et al., 2017, Science Advances · PMID 29226240 · Optical tomography (LCCT)
Oi et al., 2017, Annals of Botany · PMID 28444369 · FIB-SEM
Curation note: 1 visible 3D reconstruction, 2 addtl in supp movies (chloroplast counts)
Valm et al., 2017, Nature · PMID 28538724 · Fluorescence (LLS)
Feng et al., 2016, Journal of Morphology · PMID 26877112 · SBF-SEM
Curation note: Randomly selected spermatozoa
Ota et al., 2016, Biotechnology for Biofuels · PMID 26811738 · ssTEM
Curation note: 1 per condition
Sakaguchi et al., 2016, Journal of Structural Biology · PMID 26772147 · SBF-SEM
Curation note: Some public data available. 22 iRBCs, as well as 10 non-iRBCs which don't count becase they don't have organelles
Niclis et al., 2015, J Royal Society Interface · PMID 26063819 · SXT
Niclis et al., 2015, J Royal Society Interface · PMID 26063819 · SXT
Rodriguez et al., 2015, IUCrJ · PMID 26306199 · X-ray diffraction
Hanssen et al., 2013, Cellular Microbiology · PMID 23461734 · SXT
Curation note: 32
Hanssen et al., 2013, Cellular Microbiology · PMID 23461734 · ET (chemical)
Curation note: 17
Wayama et al., 2013, PLoS ONE · PMID 23326471 · ssTEM
Curation note: 1 coccoid cell, 1 cyst cell
Hummel et al., 2012, PLoS One · PMID 23300909 · SXT
Curation note: (6 wt; 8 mutant)
Medeiros et al., 2012, PLoS One · PMID 22432024 · FIB-SEM
Curation note: 10 quantified (Table 1); 1 or 2 whole cell images
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Wei et al., 2012, Biotechniques · PMID 22780318 · FIB-SEM
Curation note: 1 cell per resolution
Zheng et al., 2012, Microscopy research and technique · PMID 22505187 · HXT
Ramos et al., 2011, Cytometry A · PMID 21567937 · ssTEM
Uchida et al., 2011, Yeast · PMID 21360734 · SXT
Yamaguchi et al., 2011, J Electron Microsc (Tokyo) · PMID 21908548 · ssTEM
Curation note: (3 G1, 3 early G1)
Jiang et al., 2010, PNAS · PMID 20534442 · X-ray diffraction
Heymann et al., 2009, Journal of Structural Biology · PMID 19116171 · FIB-SEM (IA-SEM)
Uchida et al., 2009, Proc Natl Acad Sci USA · PMID 19880740 · SXT
Curation note: split between yeast-like and germ tube (life cycle)
Noske et al., 2008, Journal of Structural Biology · PMID 18069000 · ET (Cryo)
Parkinson et al., 2008, Journal of Structural Biology · PMID 18387313 · SXT
Curation note: 1 early cc, 1 pre-division, 1 mother & 1 daughter (attached)
Henderson et al., 2007, PLoS One · PMID 17710148 · ET (cryo)
Curation note: 10 (6 best cells used for quantitation) (52 imaged total); 23 dark-to-light transition; 29 light-to-dark transition;
Perktold et al., 2007, FEMS Yeast Res · PMID 17419771 · ssTEM
Curation note: at least one chemically fixed and one cryofixed
Moderate comparability; useful for targeted comparison with technical caveats.
This selection includes multiple dataset records from the same paper: Deshmukh 2024. Treat the result as an within-study alignment check, not independent cross-study validation.